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This sample represents a MAG derived from the metagenomic sample SAMN17312226

Identifiers
BioSample: SAMEA114584010; SRA: ERS16683159
Organism
bacterium
cellular organisms; Bacteria; unclassified Bacteria
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameG02652-L1_cleanbin_000037
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:08Z
ENA-LAST-UPDATE2023-11-07T00:47:08Z
External IdSAMEA114584010
INSDC center nameICMB
INSDC first public2023-11-07T00:47:08Z
INSDC last update2023-11-07T00:47:08Z
INSDC statuspublic
Submitter IdG02652-L1_cleanbin_000037
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score97.5
completeness softwareMAGSCoT
contamination score1.67
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312226
scientific_namebacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114584010
ID:
38175650

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