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This sample represents a MAG derived from the metagenomic sample SAMN17312227

Identifiers
BioSample: SAMEA114585372; SRA: ERS16684521
Organism
Alloprevotella sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella; unclassified Alloprevotella
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameSRR8978445_cleanbin_000007
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:11Z
ENA-LAST-UPDATE2023-11-07T00:47:11Z
External IdSAMEA114585372
INSDC center nameICMB
INSDC first public2023-11-07T00:47:11Z
INSDC last update2023-11-07T00:47:11Z
INSDC statuspublic
Submitter IdSRR8978445_cleanbin_000007
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score82.5
completeness softwareMAGSCoT
contamination score4.17
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312227
scientific_nameAlloprevotella sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585372
ID:
38177012

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