This sample represents a MAG derived from the meta... - BioSample - NCBI

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This sample represents a MAG derived from the metagenomic sample SAMN17312238

Identifiers: BioSample: SAMEA114586876; SRA: ERS16686025

Organism: bacterium
cellular organisms; Bacteria; unclassified Bacteria

Attributes

broad-scale environmental context	hominid body
collection date	2001/2014
environmental medium	feces
geographic location	Cote d'Ivoire
investigation type	metagenome-assembled genome
isolation source	Feces of Pan troglodytes verus
sample name	H07636-L1_cleanbin_000029
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:27Z
ENA-LAST-UPDATE	2023-11-07T00:47:27Z
External Id	SAMEA114586876
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:27Z
INSDC last update	2023-11-07T00:47:27Z
INSDC status	public
Submitter Id	H07636-L1_cleanbin_000029
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	65.83
completeness software	MAGSCoT
contamination score	2.5
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Pan troglodytes gut
sample derived from	SAMN17312238
scientific_name	bacterium
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets

BioProject: PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission: EBI; 2023-11-09

Accession:: SAMEA114586876
ID:: 38178515

BioProject Nucleotide

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This sample represents a MAG derived from the metagenomic sample SAMN17312238
This sample represents a MAG derived from the metagenomic sample SAMN17312238

biosample
MAG TPA_asm: Candidatus Acutalibacter ornithocaccae isolate ChiBcolR8-3208, whol...
MAG TPA_asm: Candidatus Acutalibacter ornithocaccae isolate ChiBcolR8-3208, whole genome shotgun sequencing project
gi|2063303967|tpg|DWXZ00000000.1|DW 00000

Nucleotide
Gene Links for GEO Profiles (Select 24637835) (1)
Gene
Cep76 centrosomal protein 76 [Mus musculus]
Cep76 centrosomal protein 76 [Mus musculus]
Gene ID:225659

Gene
Pelagibacteraceae bacterium isolate AH-541-E08, whole genome shotgun sequencing ...
Pelagibacteraceae bacterium isolate AH-541-E08, whole genome shotgun sequencing project
gi|2438005543|gb|JAOMJZ000000000.1| Z010000000

Nucleotide

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