This sample represents a MAG derived from the meta... - BioSample

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Result Filters

Organism: Alistipes shahii
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes

Attributes

broad-scale environmental context	hominid body
collection date	2011/2014
environmental medium	feces
geographic location	Germany
investigation type	metagenome-assembled genome
isolation source	Feces of Homo sapiens (GER)
sample name	H07683-L1_cleanbin_000027
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:32Z
ENA-LAST-UPDATE	2023-11-07T00:47:32Z
External Id	SAMEA114588697
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:32Z
INSDC last update	2023-11-07T00:47:32Z
INSDC status	public
Submitter Id	H07683-L1_cleanbin_000027
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	60
completeness software	MAGSCoT
contamination score	5.83
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Human gut
sample derived from	SAMN17312147
scientific_name	Alistipes shahii
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets