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Metagenome-assembled genome: ERR2206760_bin.40_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14074768; SRA: ERS11677998
Organism
uncultured Synechococcus sp.
cellular organisms; Bacteria; Terrabacteria group; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus; environmental samples
Attributes
collection date2014-06-06
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationBaltic Sea
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameTwo out of three datasets (the first one already published with Hugerth et al 2015) included in the Baltic Sea reference metagenome assembly. The assembly include herein is a coassembly of all three datasets, complete with annotated genes to facilitate further studies of the Baltic Sea with much less computational effort. The assembly is constructed using 2.6 billion metagenomic reads from 81 water samples, spanning both spatial and temporal dimensions, and contains 6.8 million genes that have been annotated for function and taxonomy. The assembly is useful as a reference, facilitating taxonomic and functional annotation of additional samples by simply mapping their reads against the assembly.
sample nameERR2206760_bin.40_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14074768
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:37Z
INSDC last update2023-01-03T00:32:37Z
INSDC statuspublic
Submitter IdERR2206760_bin.40_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMegahit
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score86.96
completeness softwareCheckM
contamination score1.63
geographic location (latitude)56.867
geographic location (longitude)11.4339
metagenomic sourcemarine metagenome
sample derived fromSAMEA104408601
scientific_nameuncultured Synechococcus sp.
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2206760 of study ERP104730.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14074768
ID:
32556684

BioProject Nucleotide

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