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Metagenome-assembled genome: ERR598945_bin.21_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14074970; SRA: ERS11678199
Organism
uncultured Flavobacteriaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; environmental samples
Attributes
collection date2011-01-03
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameSeawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample nameERR598945_bin.21_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14074970
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:22Z
INSDC last update2023-01-03T00:32:22Z
INSDC statuspublic
Submitter IdERR598945_bin.21_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score93.49
completeness softwareCheckM
contamination score0.0
geographic location (latitude)-60.2287
geographic location (longitude)-60.6476
metagenomic sourcemarine metagenome
sample derived fromSAMEA2621487
scientific_nameuncultured Flavobacteriaceae bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR598945 of study ERP001736.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14074970
ID:
32556885

BioProject Nucleotide

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