Metagenome-assembled genome: SRR5976593_bin.12_CON... - BioSample

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Result Filters

Organism: uncultured Opitutia bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Opitutia; environmental samples

Attributes

collection date	2014-06-01
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Pacific Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Taxonomic and functional insights of the microbial communities in the northwestern Pacific Ocean
sample name	SRR5976593_bin.12_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075565
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:20Z
INSDC last update	2023-01-03T00:32:20Z
INSDC status	public
Submitter Id	SRR5976593_bin.12_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	95.27
completeness software	CheckM
contamination score	7.26
geographic location (latitude)	53.991
geographic location (longitude)	162.388
metagenomic source	marine metagenome
sample derived from	SAMN07510715
scientific_name	uncultured Opitutae bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5976593 of study SRP116184.