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Metagenome-assembled genome: SRR6231157_bin.48_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14075585; SRA: ERS11678814
Organism
uncultured Verrucomicrobiota bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; environmental samples
Attributes
collection date2016-03-01
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameWastewater treatment plants (WWTPs) are thought to be potential incubators of antibiotic resistance. Persistence of commonly used antibiotics in wastewater may increase the potential for survival and horizontal transfer of adaptive genes in bacterial populations, some of which may pose a threat to human health. In this study, we assayed the concentrations of ten common antibiotics in wastewater influents, treatment stage influents and effluents, and upstream and downstream surface waters from two Charlotte area wastewater plants, including residential and hospital trunkline locations. We performed whole genome shotgun sequencing, to assay the taxonomic and resistome compositions at each of these sites across four time points during the late winter to mid-summer of 2016.
sample nameSRR6231157_bin.48_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03T00:32:24Z
ENA-LAST-UPDATE2023-01-03T00:32:24Z
External IdSAMEA14075585
INSDC center nameEBI
INSDC first public2023-01-03T00:32:24Z
INSDC last update2023-01-03T00:32:24Z
INSDC statuspublic
Submitter IdSRR6231157_bin.48_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.6
completeness softwareCheckM
contamination score4.62
geographic location (latitude)35.33165
geographic location (longitude)-80.715546
metagenomic sourcemarine metagenome
sample derived fromSAMN07839287
scientific_nameuncultured Verrucomicrobia bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6231157 of study SRP121672.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14075585
ID:
32557500

BioProject Nucleotide

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