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Human gut genome

Identifiers
BioSample: SAMEA5850790; SRA: ERS3639317
Organism
uncultured Gardnerella sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Gardnerella; environmental samples
Attributes
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
geographic locationItaly
investigation typemetagenome
isolation sourcehuman gut
project nameHuman gut genomes
sample nameMGYG-HGUT-01287
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2019-08-06T09:56:23Z
ENA-LAST-UPDATE2019-08-09T12:56:08Z
External IdSAMEA5850790
INSDC center nameEMG
INSDC first public2019-08-06T09:56:23Z
INSDC last update2019-08-09T12:56:08Z
INSDC statuspublic
Submitter IdMGYG-HGUT-01287
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
broker nameEBI-EMG
common nameuncultured Gardnerella sp.
completeness score100
contamination score0.70
metagenomic sourcehuman gut metagenome
sample derived fromnot provided
scientific_nameuncultured Gardnerella sp.
BioProject
PRJEB33885 The Unified Human Gastrointestinal Genome catalogue
Retrieve all samples from this project

Submission
EBI; 2019-08-07
Accession:
SAMEA5850790
ID:
12519760

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