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Polyp Mutant 4

Identifiers
BioSample: SAMEA7302650; SRA: ERS5061208
Organism
Nematostella vectensis (starlet sea anemone)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
Attributes
development stageprimary polyp
genotypeNvLsd-/-
sample nameE-MTAB-9562:Polyp Mutant 4
ENA first public2021-07-01
ENA last update2021-07-01
ENA-CHECKLISTERC000011
External IdSAMEA7302650
INSDC center aliasSars Centre for Marine Molecular Biology
INSDC center nameSars Centre for Marine Molecular Biology
INSDC first public2021-07-01T00:10:47Z
INSDC last update2021-07-01T00:10:47Z
INSDC statuspublic
Submitter IdE-MTAB-9562:Polyp Mutant 4
broker nameArrayExpress
common namestarlet sea anemone
Description

Protocols: We performed an NvLsd1GFP/- x NvLsd1GFP/- cross. 75% of the animals have at least one copy of the NvLsd1GFP allele, hereafter called control, and the homozygous mutant animals are GFP negative, hereafter NvLsd-/-. Anaimals were separated based on whether they were GFP negative or positive and 50 animals were used per sample. 50 animals per sample were lysed in 500 μl TRIzol reagent (Invitrogen, 15596026) by vortexing extensively and incubated at RT for 5 minutes. 100 μl of chloroform was added and mixed vigorously and the aqueous component was isolated using MaXtract High Density tubes (Qiagen, 129046) using the manufacturers protocol. One volume of 100% Ethanol was added to the aqueous phase. This was then processed using an RNeasy Micro Kit (Qiagen, 74004) using the manufacturers protocol including on column DNase digestion using the RNase-Free DNase Set (Qiagen, 79254). RNA quality was assessed using an RNA 6000 Pico Kit (Aligent, 5067-1513) and concentration determined using the Qubit™ RNA HS assay kit (Invitrogen, Q32852). Libraries were prepared using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (E7760L), with following changes: 25ng RNA input, 1/100 adaptor dilution, 14 PCR cycles.

BioProject
PRJEB40317 RNA-seq of Nematostella NvLsd1 mutants
Retrieve all samples from this project

Submission
EBI; 2021-07-02
Accession:
SAMEA7302650
ID:
20015306

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