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Australian marsupial phylogenetic study. Bioplatforms Australia and Oz Mammals Genomics.

Identifiers
BioSample: SAMEA7321087; Sample name: 53366; SRA: ERS5079623
Organism
Lagorchestes hirsutus (rufous hare-wallaby)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Metatheria; Diprotodontia; Macropodidae; Lagorchestes
Attributes
investigation typephylogenetic study
geographic locationAustralia
tissueear epithelium
sub speciescentral australia
identified byColleen Sims | DBCA
sexmale
bioproject_accessionPRJEB39788
sequencing methodIllumina SBS, short PE reads
geographic location (region and locality)Western Australia
BPA_sample_ID40394
BPA_library_ID53366
voucher_numberno voucher
tissue_numberDEC02901
voucher_or_tissue_numberDEC02901
institution_nameDepartment of Biodiversity, Conservation and Attractions
collectionMammal
tissue_preservationethanol
phylumChordata
classMammalia
orderDiprotodontia
familyMacropodidae
genusLagorchestes
specieshirsutus
wild_captivecaptive
state_or_regionWestern Australia
location_textMatuwa (Lorna Glen) enclosure, Wiluna
decimal_latitude-20.4
decimal_longitude115.57
DNA_extraction_methodsalting out
TCCP_ID53366_AHGVYGBCX2_AGATAGG_S28
depthmean68.87
depthmedian59
totalreadsstart4762333
totalmapped2tgt0.3123
totalpaired0.2925
CALLABLE1775067
NO_COVERAGE72
LOW_COVERAGE172063
ReadLength100bp
AtlasLivingAustraliaNA
ENA-FIRST-PUBLIC2021-01-05
ENA-LAST-UPDATE2020-09-25
BioProject
PRJEB39788 Australian marsupial phylogeny
Retrieve all samples from this project

Submission
EBI; 2021-01-06
Accession:
SAMEA7321087
ID:
17239544

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