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Australian marsupial phylogenetic study. Bioplatforms Australia and Oz Mammals Genomics.

Identifiers
BioSample: SAMEA7321099; Sample name: 53378; SRA: ERS5079635
Organism
Lagorchestes hirsutus (rufous hare-wallaby)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Metatheria; Diprotodontia; Macropodidae; Lagorchestes
Attributes
investigation typephylogenetic study
geographic locationAustralia
tissueear epithelium
sub speciescentral australia
identified byColleen Sims | DBCA
sexnot determined
bioproject_accessionPRJEB39788
sequencing methodIllumina SBS, short PE reads
geographic location (region and locality)Western Australia
BPA_sample_ID40418
BPA_library_ID53378
voucher_numberno voucher
tissue_numberDEC02927
voucher_or_tissue_numberDEC02927
institution_nameDepartment of Biodiversity, Conservation and Attractions
collectionMammal
tissue_preservationethanol
phylumChordata
classMammalia
orderDiprotodontia
familyMacropodidae
genusLagorchestes
specieshirsutus
wild_captivecaptive
state_or_regionWestern Australia
location_textMatuwa (Lorna Glen) enclosure, Wiluna
decimal_latitude-26.19
decimal_longitude121.34
DNA_extraction_methodsalting out
TCCP_ID53378_AHGVYGBCX2_TTCGCAA_S40
depthmean58.28
depthmedian49
totalreadsstart3919690
totalmapped2tgt0.3347
totalpaired0.3142
CALLABLE1847713
NO_COVERAGE86
LOW_COVERAGE191154
ReadLength100bp
AtlasLivingAustraliaNA
ENA-FIRST-PUBLIC2021-01-05
ENA-LAST-UPDATE2020-09-25
BioProject
PRJEB39788 Australian marsupial phylogeny
Retrieve all samples from this project

Submission
EBI; 2021-01-06
Accession:
SAMEA7321099
ID:
17239556

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