Pathogen: clinical or host-associated sample from ... - BioSample - NCBI

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Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers: BioSample: SAMN41091867; Sample name: BWH_1910_E_col; SRA: SRS21133320

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

isolate	BWH_1910_E_col
collected by	Brigham and Women's Hospital
collection date	2024
geographic location	USA:Boston
host	Homo sapiens
host disease	Urinary tract infection
isolation source	urine
latitude and longitude	42.3362 N 71.1067 W
host age	49

BioProject: PRJNA278886
Retrieve all samples from this project

Submission: Brigham and Women's Hospital, Jay Worley; 2024-04-26

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amoxicillin-clavulanic acid	susceptible	==	8/4	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
levofloxacin	resistant	>=	8	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
cefazolin	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
piperacillin-tazobactam	susceptible	<=	4/4	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
ceftazidime	susceptible	==	4	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
ciprofloxacin	resistant	>=	4	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
cefoxitin	susceptible	<=	4	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
ampicillin	resistant	>=	32	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
ceftriaxone	resistant	==	32	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
fosfomycin	susceptible	==	26	mm	disk diffusion				CLSI
cefepime	susceptible	==	2	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
amikacin	susceptible	<=	2	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	susceptible	<=	19/1	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
nitrofurantoin	susceptible	<=	16	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
tetracycline	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
tobramycin	susceptible	<=	1	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
gentamicin	susceptible	<=	1	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
ertapenem	susceptible	<=	0.5	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI
meropenem	susceptible	<=	0.25	mg/L	MIC	Vitek	Biomérieux	96-Well Plate	CLSI

Accession:: SAMN41091867
ID:: 41091867

BioProject SRA Nucleotide

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Pathogen: clinical or host-associated sample from Escherichia coli
Pathogen: clinical or host-associated sample from Escherichia coli

biosample
Pelagibacteraceae bacterium isolate AH-141-I04, whole genome shotgun sequencing ...
Pelagibacteraceae bacterium isolate AH-141-I04, whole genome shotgun sequencing project
gi|2438258078|gb|JAOEKZ000000000.1| Z010000000

Nucleotide
This sample represents a MAG derived from the metagenomic sample SAMN10093257
This sample represents a MAG derived from the metagenomic sample SAMN10093257

biosample
Taxonomy Links for Nucleotide (Select 2717380637) (1)
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