| collection date | 2019-01-02 |
|---|
| broad-scale environmental context | urban biome [ENVO:01000249], temperate biome [ENVO:01001831] |
|---|
| local-scale environmental context | active sulphate-reducing enrichment culturing unit [ENVO:01001826] |
|---|
| environmental medium | thermophilic sediment [ENVO:01000132], sulphate-reducing sediment [ENVO:01000153], hydrothermally-influenced sediment [ENVO:01001821] |
|---|
| geographic location | Germany |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | anoxic ethane-degrading enrichment at 50 degrees Celsius derived from thermophilic sediment |
|---|
| project name | Anaerobic ethane oxidation by archaea in the Guaymas Basin |
|---|
| sample name | gfbio:2ba61e4a-a911-483b-ba5e-e0ad8afd3b38:HotSeep1_E50_DN |
|---|
| ENA first public | 2020-12-18 |
|---|
| ENA last update | 2020-12-18 |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| External Id | SAMEA7740441 |
|---|
| INSDC center alias | Max Planck Institute for Marine Microbiology |
|---|
| INSDC center name | Max Planck Institute for Marine Microbiology |
|---|
| INSDC first public | 2020-12-18T17:06:48Z |
|---|
| INSDC last update | 2020-12-18T15:09:06Z |
|---|
| INSDC status | public |
|---|
| Submitter Id | gfbio:2ba61e4a-a911-483b-ba5e-e0ad8afd3b38:HotSeep1_E50_DN |
|---|
| assembly quality | Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs |
|---|
| assembly software | HGAP4 and CANU |
|---|
| binning parameters | Manual binning; coverage |
|---|
| binning software | Manual binning, bin polishing with resequencing (SMRTlink) |
|---|
| broker name | German Federation for Biological Data (GFBio) |
|---|
| completeness score | 71 |
|---|
| completeness software | Checkm |
|---|
| contamination score | 5 |
|---|
| geographic location (latitude) | 53.109942 |
|---|
| geographic location (longitude) | 8.847778 |
|---|
| metagenomic source | marine sediment metagenome |
|---|
| sample derived from | ERS4268470,ERR3841960,ERR3841958 |
|---|
| sequencing method | PacBio Sequel |
|---|
| taxonomic identity marker | 16S |
|---|