collection date | 2019-01-02 |
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broad-scale environmental context | urban biome [ENVO:01000249], temperate biome [ENVO:01001831] |
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local-scale environmental context | active sulphate-reducing enrichment culturing unit [ENVO:01001826] |
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environmental medium | thermophilic sediment [ENVO:01000132], sulphate-reducing sediment [ENVO:01000153], hydrothermally-influenced sediment [ENVO:01001821] |
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geographic location | Germany |
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investigation type | metagenome-assembled genome |
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isolation source | anoxic ethane-degrading enrichment at 50 degrees Celsius derived from thermophilic sediment |
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project name | Anaerobic ethane oxidation by archaea in the Guaymas Basin |
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sample name | gfbio:2ba61e4a-a911-483b-ba5e-e0ad8afd3b38:HotSeep1_E50_DN |
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ENA first public | 2020-12-18 |
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ENA last update | 2020-12-18 |
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ENA-CHECKLIST | ERC000047 |
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External Id | SAMEA7740441 |
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INSDC center alias | Max Planck Institute for Marine Microbiology |
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INSDC center name | Max Planck Institute for Marine Microbiology |
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INSDC first public | 2020-12-18T17:06:48Z |
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INSDC last update | 2020-12-18T15:09:06Z |
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INSDC status | public |
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Submitter Id | gfbio:2ba61e4a-a911-483b-ba5e-e0ad8afd3b38:HotSeep1_E50_DN |
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assembly quality | Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs |
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assembly software | HGAP4 and CANU |
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binning parameters | Manual binning; coverage |
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binning software | Manual binning, bin polishing with resequencing (SMRTlink) |
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broker name | German Federation for Biological Data (GFBio) |
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completeness score | 71 |
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completeness software | Checkm |
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contamination score | 5 |
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geographic location (latitude) | 53.109942 |
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geographic location (longitude) | 8.847778 |
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metagenomic source | marine sediment metagenome |
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sample derived from | ERS4268470,ERR3841960,ERR3841958 |
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sequencing method | PacBio Sequel |
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taxonomic identity marker | 16S |
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