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Metagenome-assembled genome: ERR912127_bin.78_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14085347; SRA: ERS11688479
Organism
Obesumbacterium proteus
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Obesumbacterium
Attributes
collection date2010-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationUnited Kingdom
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameThe gut microbiota has been typically viewed as an environmental factor for human health. Twins are well suited for investigating the concordance of their gut microbiomes and decomposing genetic and environmental influences. However, existing twin studies utilizing metagenomic shotgun sequencing have included only a few samples. Here, we sequenced fecal samples from 250 adult twins in the TwinsUK registry and constructed a comprehensive gut microbial reference gene catalog. We demonstrate heritability of many microbial taxa and functional modules in the gut microbiome, including those associated with diseases. Moreover, we identified 8 million SNPs in the gut microbiome and observe a high similarity in microbiome SNPs between twins that slowly decreases after decades of living apart. The results shed new light on the genetic and environmental influences on the composition and function of the gut microbiome that could relate to risk of complex diseases.
sample nameERR912127_bin.78_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14085347
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:08Z
INSDC last update2023-01-03T00:33:08Z
INSDC statuspublic
Submitter IdERR912127_bin.78_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score100
completeness softwareCheckM
contamination score0.39
geographic location (latitude)51.5
geographic location (longitude)-0.12
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA3449322
scientific_nameObesumbacterium proteus
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR912127 of study ERP010700.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14085347
ID:
32561974

BioProject Nucleotide

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