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Animal sample from Diceros bicornis minor (Southern black rhinoceros) for VGP genome mDicBic1

Identifiers
BioSample: SAMN22047685; Sample name: Animal sample from Diceros bicornis minor (Southern black rhinoceros) for VGP genome mDicBic1; SRA: SRS18702625
Organism
Diceros bicornis minor
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Diceros; Diceros bicornis
Package
Model organism or animal; version 1.0
Attributes
isolatemBicDic1
development stagejuvenile
sexfemale
tissueblood
biomaterial providerSmithsonian Conservation Biology Institute
birth dateJune 9 1999
birth locationFossil Rim Wildlife Center, Glen Rose, Texas, USA
collected byBudhan Pukazhenthi
geographic locationUSA
latitude and longitude32.1795 N 97.7972 W
storage conditions-80C
stud book number718
treatmentFlash Frozen
sub speciesminor
NameMupani
Description

The Southern black rhinoceros is a subspecies of the black rhinoceros, native to southern parts of Africa. As of 2021 it is considered critically endangered. This trio of samples was collected to create a high-quality reference genome for two haplotypes. The female (mDicBic1) called Mupani who the reference genome was generated, was born in the Fossil Rim Wildlife Center in Texas. Her mother Coco (mDicBic2) and father (mDicBic3), originally from Zimbabwe. Sample collection was conducted by Budhan Pukazhenthi, in coordination with Klaus-Peter Koepfli. Blood from these samples were used to create high-quality reference genome assemblies of each haplotype, coordinated by Erich Jarvis and Olivier Fedrigo, at the Rockefeller University Vertebrate Genome Lab, as part of the Vertebrate Genomes Project (VGP). The data from these BioSamples are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/about/data_use_policy.

BioProjects
PRJNA1008602
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PRJNA998007 Diceros bicornis minor isolate:mBicDic1
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PRJNA773944 Diceros bicornis minor isolate:mBicDic1
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PRJNA773943 Diceros bicornis minor isolate:mBicDic1
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2021-10-04
Accession:
SAMN22047685
ID:
22047685

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