Metagenome-Assembled Genome: SRR15443032_bin.14_Me... - BioSample

Metagenome-Assembled Genome: SRR15443032_bin.14_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114450498; SRA: ERS16436957

Organism: Actinomyces oris
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces

Attributes

broad-scale environmental context	human digestive system
collection date	2017-05-25
environmental medium	saliva
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	This study consists of longitudinal saliva samples from children aged 2 months to 5 years from the Center for Oral Health Research in Appalachia 2 study
sample name	SRR15443032_bin.14_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR15443032_bin.14_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	85.81
completeness software	CheckM
contamination score	1.94
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMN20770745
scientific_name	Actinomyces oris
sequencing method	Illumina HiSeq 4000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15443032 of study SRP331553.

BioProject: PRJEB66073
Retrieve all samples from this project

Submission: EBI; 2023-09-29

Accession:: SAMEA114450498
ID:: 37603651

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Metagenome-Assembled Genome: SRR15443032_bin.14_MetaWRAP_v1.3_MAG

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