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Links from Nucleotide

Items: 1 to 20 of 318

1.

Preimplantation Embryo

The source of this pathway is RNA-Seq data from single-cell pre-implantation embryos (Supplemental Table 1): http://0-www.nature.com.brum.beds.ac.uk/nsmb/journal/v20/n9/full/nsmb.2660.html Analysis options for running the single-cell analysis workflow in AltAnalyze (ICGS): * For optimal filtering...

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
2.

Mesodermal Commitment Pathway

Model depicting mesodermal specification based on the literature and highly enriched gene expression profiles via comparison across dozens of independent induced and embryonic pluripotent stem cell lines, following differentiation to multiple lineages (ectoderm, mesoderm, endoderm,...

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
3.

sequence-specific double-stranded DNA binding

Interacting selectively and non-covalently with double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding. Synonym: sequence-specific dsDNA binding;

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
1310813
GO
: GO:1990837
4.

positive regulation of nucleic acid-templated transcription

Any process that activates or increases the frequency, rate or extent of nucleic acid-templated transcription. Synonyms: activation of nucleic acid-templated transcription; up regulation of nucleic acid-templated transcription; up-regulation of nucleic acid-templated transcription;...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
1129335
GO
: GO:1903508
5.

negative regulation of nucleic acid-templated transcription

Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription. Synonyms: down regulation of nucleic acid-templated transcription; down-regulation of nucleic acid-templated transcription; downregulation of nucleic acid-templated transcription;...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
1129334
GO
: GO:1903507
6.

regulation of nucleic acid-templated transcription

Any process that modulates the frequency, rate or extent of nucleic acid-templated transcription.

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
1129333
GO
: GO:1903506
7.

nucleic acid-templated transcription

The cellular synthesis of RNA on a template of nucleic acid (DNA or RNA).

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
1129277
GO
: GO:0097659
8.

Signaling pathways regulating pluripotency of stem cells

Pluripotent stem cells (PSCs) are basic cells with an indefinite self-renewal capacity and the potential to generate all the cell types of the three germinal layers. The types of PSCs known to date include embryonic stem (ES) and induced pluripotent stem (iPS) cells. ES cells are...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
1033502
KEGG
: ko04550
9.

Signaling pathways regulating pluripotency of stem cells

Pluripotent stem cells (PSCs) are basic cells with an indefinite self-renewal capacity and the potential to generate all the cell types of the three germinal layers. The types of PSCs known to date include embryonic stem (ES) and induced pluripotent stem (iPS) cells. ES cells are...

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Homo sapiens
10.

maintenance of cell number

Any process by which the numbers of cells of a particular type in a tissue are maintained.

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
1022128
GO
: GO:0098727
11.

positive regulation of RNA biosynthetic process

Any process that activates or increases the frequency, rate or extent of RNA biosynthetic process. Synonyms: activation of RNA anabolism; activation of RNA biosynthesis; activation of RNA biosynthetic process; activation of RNA formation; activation of RNA synthesis; positive regulation...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
948123
GO
: GO:1902680
12.

negative regulation of RNA biosynthetic process

Any process that stops, prevents or reduces the frequency, rate or extent of RNA biosynthetic process. Synonyms: down regulation of RNA anabolism; down regulation of RNA biosynthesis; down regulation of RNA biosynthetic process; down regulation of RNA formation; down regulation of...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
948122
GO
: GO:1902679
13.

single-organism localization

A localization which involves only one organism. Synonym: single organism localization;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
925927
GO
: GO:1902578
14.

regulation of RNA biosynthetic process

Any process that modulates the frequency, rate or extent of RNA biosynthetic process. Synonyms: regulation of RNA anabolism; regulation of RNA biosynthesis; regulation of RNA formation; regulation of RNA synthesis;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
755247
GO
: GO:2001141
15.

regulation of muscle tissue development

Any process that modulates the frequency, rate or extent of muscle tissue development.

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
754812
GO
: GO:1901861
16.

organic substance biosynthetic process

The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon. Synonyms: organic molecular entity anabolism; organic molecular entity biosynthesis; organic molecular entity biosynthetic process; organic molecular entity...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
754533
GO
: GO:1901576
17.

heterocyclic compound binding

Interacting selectively and non-covalently with heterocyclic compound.

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
754325
GO
: GO:1901363
18.

organic cyclic compound biosynthetic process

The chemical reactions and pathways resulting in the formation of organic cyclic compound. Synonyms: organic cyclic compound anabolism; organic cyclic compound biosynthesis; organic cyclic compound formation; organic cyclic compound synthesis;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
754324
GO
: GO:1901362
19.

organic cyclic compound metabolic process

The chemical reactions and pathways involving organic cyclic compound. Synonym: organic cyclic compound metabolism;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
754322
GO
: GO:1901360
20.

organic cyclic compound binding

Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure.

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
752660
GO
: GO:0097159

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