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Links from Protein

Items: 1 to 20 of 110

1.

Bmal1:Clock,Npas2 activates circadian gene expression

Bmal1:Clock (Arntl:Clock) and Bmal1:Npas2 (Arntl:Npas2) heterodimers bind to sequence elements (E boxes) in the promoters of target genes and enhance transcription (Gekakis et al. 1998, reviewed in Munoz and Baler 2003).

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
2.

Circadian Clock

At the center of the mouse circadian clock is a negative transcription/translation-based feedback loop: The Bmal1:Clock/Npas2 (Arntl:Clock/Npas2) heterodimer transactivates Cryptochrome (Cry) and Period (Per) genes; the Cry and Per proteins then inhibit transactivation by Bmal1:Clock/Npas2....

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
3.

BMAL1:CLOCK,NPAS2 activates circadian gene expression

computationally inferred pathway (not manually curated)

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
4.

Mus musculus biological processes

Certain mouse pathways have been fully manually curated in Reactome in order to support the manual inference of well-conserved but less well-studied human pathways. These pathways include Circadian clock, Meiotic recombination, Meiotic synapsis, Signaling by leptin, Transcriptional...

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
5.

Circadian Clock

computationally inferred pathway (not manually curated)

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
6.

sequence-specific double-stranded DNA binding

Interacting selectively and non-covalently with double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding. Synonym: sequence-specific dsDNA binding;

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
1310813
GO
: GO:1990837
7.

regulation of nucleic acid-templated transcription

Any process that modulates the frequency, rate or extent of nucleic acid-templated transcription.

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
1129333
GO
: GO:1903506
8.

regulation of RNA biosynthetic process

Any process that modulates the frequency, rate or extent of RNA biosynthetic process. Synonyms: regulation of RNA anabolism; regulation of RNA biosynthesis; regulation of RNA formation; regulation of RNA synthesis;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
755247
GO
: GO:2001141
9.

organic cyclic compound binding

Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure.

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
752660
GO
: GO:0097159
10.

single-organism developmental process

A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
751909
GO
: GO:0044767
11.

transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding

Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. Synonym: RNA polymerase II transcription...

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
750780
GO
: GO:0001228
12.

biological regulation

Any process that modulates a measurable attribute of any biological process, quality or function. Synonym: regulation;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
514938
GO
: GO:0065007
13.

regulation of RNA metabolic process

Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA. Synonym: regulation of RNA metabolism;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
512143
GO
: GO:0051252
14.

positive regulation of nitrogen compound metabolic process

Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. Synonyms: activation of nitrogen metabolic process; positive regulation of nitrogen metabolic process; positive regulation of nitrogen...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
512083
GO
: GO:0051173
15.

regulation of nitrogen compound metabolic process

Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. Synonyms: regulation of nitrogen metabolic process; regulation of nitrogen metabolism;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
512081
GO
: GO:0051171
16.

regulation of cellular process

Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
511763
GO
: GO:0050794
17.

regulation of biological process

Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. Synonyms: GO:0050791; regulation...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
511759
GO
: GO:0050789
18.

anatomical structure development

The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction....

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
510906
GO
: GO:0048856
19.

rhythmic process

Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism. Synonym: rhythm;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
510583
GO
: GO:0048511
20.

heterocycle metabolic process

The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). Synonym: heterocycle metabolism;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
508743
GO
: GO:0046483

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