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Links from Nucleotide

Items: 1 to 20 of 87

1.

Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha

computationally inferred pathway (not manually curated)

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
2.

Regulation of Hypoxia-inducible Factor (HIF) by oxygen

computationally inferred pathway (not manually curated)

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
3.

Cellular response to hypoxia

computationally inferred pathway (not manually curated)

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
4.

Cellular responses to stress

computationally inferred pathway (not manually curated)

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
5.

ubiquitin-like protein ligase activity

Catalysis of the transfer of a ubiquitin-like protein (ULP) to a substrate protein via the reaction X-ULP + S --> X + S-ULP, where X is either an E2 or E3 enzyme, the X-ULP linkage is a thioester bond, and the S-ULP linkage is an isopeptide bond between the C-terminal glycine of ULP...

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
1129228
GO
: GO:0061659
6.

macromolecular complex binding

Interacting selectively and non-covalently with any macromolecular complex.

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
1129214
GO
: GO:0044877
7.

ubiquitin protein ligase activity

Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal...

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
987826
GO
: GO:0061630
8.

transferase complex

A protein complex capable of catalyzing the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor).

Type
:
structural_complex
Taxonomic scope
:
conserved biosystem
BSID:
911534
GO
: GO:1990234
9.

catalytic complex

A protein complex which is capable of catalytic activity. Synonym: enzyme complex;

Type
:
structural_complex
Taxonomic scope
:
conserved biosystem
BSID:
911482
GO
: GO:1902494
10.

ECV complex

Structural complex; Genetic information processing; Ubiquitin system

Type
:
structural_complex
Taxonomic scope
:
conserved biosystem
BSID:
890606
KEGG
: M00383
11.

XPodNet - protein-protein interactions in the podocyte expanded by STRING

XPodNet is a larger version of PodNet. Interactions from STRING database have been added to PodNet to build XPodNet. Hence, not all interactions found in XPodNet do necessarily have to be curated.

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
12.

organic substance catabolic process

The chemical reactions and pathways resulting in the breakdown of an organic substance, any molecular entity containing carbon. Synonyms: organic molecular entity breakdown; organic molecular entity catabolic process; organic molecular entity catabolism; organic molecular entity degradation;...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
754532
GO
: GO:1901575
13.

ubiquitin-like protein ligase binding

Interacting selectively and non-covalently with a ubiquitin-like protein ligase, such as ubiquitin-ligase. Synonyms: E3 protein ligase binding; small conjugating protein ligase binding;

Type
:
functional_set
Taxonomic scope
:
conserved biosystem
BSID:
751602
GO
: GO:0044389
14.

protein modification process

The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). Synonym:...

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
751131
GO
: GO:0036211
15.

HIF-1 signaling pathway

Hypoxia-inducible factor 1 (HIF-1) is a transcription factor that functions as a master regulator of oxygen homeostasis. It consists of two subunits: an inducibly-expressed HIF-1alpha subunit and a constitutively-expressed HIF-1beta subunit. Under normoxia, HIF-1 alpha undergoes hydroxylation...

Type
:
pathway
Taxonomic scope
:
organism-specific biosystem
Organism
:
Mus musculus
16.

organic substance metabolic process

The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. Synonyms: organic molecular entity metabolic process; organic molecular entity metabolism; organic substance metabolism;

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
516628
GO
: GO:0071704
17.

protein modification by small protein conjugation or removal

A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein.

Type
:
pathway
Taxonomic scope
:
conserved biosystem
BSID:
515577
GO
: GO:0070647
18.

intracellular organelle lumen

An organelle lumen that is part of an intracellular organelle.

Type
:
structural_complex
Taxonomic scope
:
conserved biosystem
BSID:
514953
GO
: GO:0070013
19.

cell part

Any constituent part of a cell, the basic structural and functional unit of all organisms. Synonyms: cellular subcomponent; protoplast;

Type
:
structural_complex
Taxonomic scope
:
conserved biosystem
BSID:
507411
GO
: GO:0044464
20.

intracellular organelle part

A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma...

Type
:
structural_complex
Taxonomic scope
:
conserved biosystem
BSID:
507394
GO
: GO:0044446

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