4GU3,3S6X


Conserved Protein Domain Family
Reo_sigma1

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pfam01664: Reo_sigma1 
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Reovirus viral attachment protein sigma 1
This family consists of the reovirus sigma 1 hemagglutinin, cell attachment protein. This glycoprotein is a minor capsid protein and also determines the serotype-specific humoral immune response. Sigma 1 consist of a fibrous tail and a globular head. The head has important roles in the cell attachment function of sigma 1 and determinant of the type-specific humoral immune response. Reovirus is part of the orthoreovirus group of retroviruses with, a dsRNA genome. Also present in this family is bacteriophage SF6 Lysozyme.
Statistics
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PSSM-Id: 366748
Aligned: 5 rows
Threshold Bit Score: 337.703
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4GU3_A   3 LNQGVTSLESAKIDSVLPPLTVREAsgVRTLSFGYDTSDFTIInSVLSLRSRLTLPTYRYPLELDTANnrVQVADRFGMR 82 
P03528 242 INSRIGATEQSYVASAVTPLRLNSS--TKVLDMLIDSSTLEIN-SSGQLTVRSTSPNLRYPIADVSGG--IGMSPNYRFR 316 Mammalian orthoreovir...
P04506 254 LPSRVSTLESAKIDSVLPPLTVREAsgVRTLSFGYDTSDFTIInSVLSLRSRLTLPTYRYPLELDTANnrVQVADRFGMR 333 Mammalian orthoreovir...
P04507 247 LPARTGSLEASRIDVVAPPLVIQSTgsTRLLRLMYEAVDFVVTnNVLTLRNRSVTPTFKFPLELNSADnsVSIHRNYRIR 326 Mammalian orthoreovir...
3S6X_A 112 INSRIGAIEQSYVASAVTPLRLNSS--TKVLDMLIDSSTLEIn-SSGQLTVRSTSPNLRYPIADVSGG--IGMSPNYRFR 186
4GU3_A  83 TGTWTGQLQYQHPQLSWRANVTLNLMKVDDWLVLSFSQMTTNSIMADGKFVINFVSGLSSGWQTGDTEPSST--IDPLST 160
P03528 317 QSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHndVVTYGA 396 Mammalian orthoreovir...
P04506 334 TGTWTGQLQYQHPQLSWRANVTLNLMKVDDWLVLSFSQMTTNSIMADGKFVINFVSGLSSGWQTGDTEPSST--IDPLST 411 Mammalian orthoreovir...
P04507 327 LGQWSGQLEYHTPSLRWNAPVTVNLMRVDDWLILSFTRFSTSGILASGKFVLNFVTGLSPGWATGSTEPSTT--TNPLST 404 Mammalian orthoreovir...
3S6X_A 187 QSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHndVVTYGA 266
4GU3_A 161 TFAAVQFLNNGQRIDAFRIMGVSEWTDGELEIKNYGGTYTGHTQVYWAPWTIMYPCNV 218
P03528 397 QTVAIGLSSGGAPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 454 Mammalian orthoreovirus 3 Dearing
P04506 412 TFAAVQFLNNGQRIDAFRIMGVSEWTDGELEIKNYGGTYTGHTQVYWAPWTIMYPCNV 469 Mammalian orthoreovirus 1 Lang
P04507 405 TFAAIQFINGSSRVDAFRILGVAEWNAGELEITNHGGTYTAHTNVDWAPMTIMYPCLG 462 Mammalian orthoreovirus 2 D5/Jones
3S6X_A 267 QTVAIGLSSGGTPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSF 324
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