Conserved Protein Domain Family
46

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PHA02562: 46 
endonuclease subunit; Provisional
Statistics
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PSSM-Id: 222878
Aligned: 22 rows
Threshold Bit Score: 791.522
Created: 9-Dec-2010
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
113200655   1 MITFETIRWKNFLSTGDQWTEIDFAESPSTLIVGTNGAGKSTILDALCFALFNKPFRKINKPQLVNSINEKGLKVEVCFS 80 
109290030   8 QLGFIRVRYKNIMSVGDDPIDMSLNKYAKTLCTGKNGAGKSTMLEAIYFALFGKPFRDITKNQLLNENTGKNLLVELWLE 87 
37651524    8 QLDFIRVRYKNIMSVGDEPIDLTLNEYAKTLCTGKNGAGKSTMLEAIYFALFGKPFRDITKNQLINENTGKNMLVELWLE 87 
33620623    3 KLNFKTLRYQNIMSVGAEPVEIQLDGFKKTLITGVNGAGKSTMIEALCFVLFGKPFRSIKKGQLINSVNKKKLLVEVWFE 82 
58532930    1 MITFKKIRWKNFLSTGNVFTEIDITKTKTNLIVGDNGAGKSTILDALTFSLFGKPFRKINKPMLVNSINEKDCITEIEFS 80 
66391506    2 KLNFKKIKYQNILSVGNTPIELEFDTAKKTLITGKNGGGKSTLIEALTYALFGKSFRDLKVGQLVNSVNKKKCLVELEIE 81 
66391846    8 QLDFIRVRYKNIMSVGDEPIDLTLNEYAKTLCTGKNGAGKSTMLEAIYFALFGKPFRDITKNQLINENTGKNMLVELWLE 87 
61806323    1 MIVFETIAWKNFLSTGDQWTDIQLDDAGATLIVGSNGAGKSTMLDALCFALFNKPFRKISKSQLVNSINEKGTKVQVTFS 80 
255929013   1 MIIFKKIRWKNFLSTGNVFSEVDLQASKTNLIIGSNGAGKSTILDALTFSLFGKPFRKINKPMLVNSINEKDCVTEIEFS 80 
294661473   2 KLKFKTLTYQNILSVGNVPIVIDFDSAKKTLITGKNGGGKSTMIEALTYALFGKSFRDLKVGQLVNSINKKKCLVELLIE 81 
113200655  81 IGPDDYRVFRGIKPNTFEIYKNNKLVDQDAAAKDTQKYLEQsVLKLNYKSFTQVVILGSSTFVPFMQLAAAHRREVIEDL 160
109290030  88 YEEKIYHITRGIKPNKFSITCDGVAIDAAASVKDFQSYFEE-MIGMNSTSFKQIVVLGTAGYTPFMQLKAPERRKLVEDL 166
37651524   88 YEEKVYHITRGIKPNKFAITCDGAQVDAAASIKDFQAYFEE-MIGMNATSFKQIVVLGTAGYTPFMQLKAPERRKLVEDL 166
33620623   83 LDGKEFYIKRGQKPEVFEVHRDGQKIDESASTKDFQEYFEG-IIGMNLASFKQIVVLGTAGYVPFMSLPAAGRRKLVEDL 161
58532930   81 IGKNEFKVIRGIKPSIFEIYCNEKLWNQESTLVDQQKNFEQnVLKMNYKSFTQIVVLGSSTFVPFMRLPVAQRREIIEDI 160
66391506   82 YGKDSYKIVRGQKPKVFEIWKNGDKLAEDSASGDYQSQLES-MLNINLVGFKQVIVLGTAGYTPFMELRTPDRRKLVEDL 160
66391846   88 YEEKVYHITRGIKPNKFAITCDGAQVDAAASIKDFQAYFEE-MIGMNATSFKQIVVLGTAGYTPFMQLKAPERRKLVEDL 166
61806323   81 IGRDEYRVFRAIKPNIFELYKNNKLVDQDAATKDTQKYLEQsILKLNFKSFTQVVILGSSTFVPFMQLTAPNRREVIEDL 160
255929013  81 IGKKEYKVVRGIKPNVFEIYCNGNLWNQESSLVEQQKNFESnVLKMNYKSFTQIVVLGSSTFVPFMRLPLAQRREIIEDI 160
294661473  82 YGNDEYKIIRGQKPKVFEIWKNGEKLPEDSAAGDYQSQLES-MLNINLVGFKQVIVLGTAGYVPFMELKTPDRRKLVEDL 160
113200655 161 LDIGIFSSMNTVLKDKIRVAQGQSSDCTHLLRLAEGKVFAQEKLISSLQEVNDNRQEEKQKKYDENLALMQDISTQKSNV 240
109290030 167 LEVSVLAQMDKINKTRIKELNQDITSVDMEINHINSQLKTYQDHQNNSNASNAAAISDHQAVYDTAREKAKEIKSAIDLL 246
37651524  167 LEVSVLAQMDKLNKARIKELNQEIASVDVTINHINTQLKTYHDHQNNSNASNDAAVADHQAVFEEARDKAKQIKSIIDSL 246
33620623  162 LDIATLGEMDKLNKAYVREITQNIQMQEMKANHVQQQINTHKKYIEDASKASAENLQRLQNMYDKEVESAKAFKAEETRL 241
58532930  161 LDIQVFSVMNILLKDKIRENNEEIKGIDYQLDLLKEKIDLQKNYLLEIDKKQKADIDKKNEKITELLNEELNHHNLINET 240
66391506  161 LSLSVISEMDKLNKSYVRGVNQQLDTLSMQVNHIQQQIATHQRFIDEQRAKANQNNARYKEIYDSHVETAKNIKAQLMQL 240
66391846  167 LEVSVLAQMDKLNKARIKELNQEIASVDVTINHINTQLKTYHDHQNNSNASNDAAVADHQAVFEEARDKAKQIKSIIDSL 246
61806323  161 LDIKIFSHMNTILKDRYKVAYQQSKDCSNLLSIAEERLKSQEKLIKSLREVNSVRRQEKEDKVVQNKALIESIEQDQSQR 240
255929013 161 LDIQVFSTMNVLLKDKVRENNEEIKTLDYEIHLLEEKIDLQKKYMFELEKKTKEEITRKENKITELLQNENENHQEVARL 240
294661473 161 LSLSIISEMDKLNKSYIRGVNRELDTLSMQIGHVQQQIATHQKFIDEQRAKANQNTARYQDIYDSHVETAKQIKAQLVEL 240
113200655 241 ENAIKNIESSiGDYSAAtktLTALRQGQADKKSQLKLIAKDLKFFREHDECPTCSQQIETAfkDAMIGSNTQRGKTIAKE 320
109290030 247 TTQITEFVMP-DSPASD---LGKFTMARAKAAAQHEQFSGIAHMHEDGGTCPTCMQQFDD---PELLVKLRDKMSQIQGQ 319
37651524  247 TEQLTNFEMP-ESPAND---LGKFTMARAKAAAQKEQFAGIAHMHEDGGVCPTCMQQFDD---PDLLTKLHDKMSVIQGQ 319
33620623  242 TDELLAVVMP-EDPSAA---LAKINTAIAQIGAQIQNFDRVIHMHEKGGICPTCTQPIIQG--ND--QAVREQKAQAEHK 313
58532930  241 NVKIEELNEEiKKYSSSsdkLKKLNTFLIKLSSKMQTCQKEHEFFEKNQVCPTCTQDLSDQfrEDKISSGKSKLDEMTLG 320
66391506  241 QAEIAETVITgADRTED---INKLRDGYTRLSMTVEQFKKLEVMYQKGGECPACKQAIKPT--PERMEEIANNIKAGTQR 315
66391846  247 TEQLTNFEMP-ESPAND---LGKFTMARAKAAAQKEQFAGIAHMHEDGGVCPTCMQQFDD---PDLLTKLHDKMSVIQGQ 319
61806323  241 KDELSVLDKQlIDTESHqyiLSDLKSKTADLKSEMKRVSKEMKFLKSHDTCPTCTQTISTEfkEGKIESLTTSGVDYAKK 320
255929013 241 NEEVLKHSKEmEELSNSatkLKKLNTFLFKIQSKLSSCQKEHSFFTDNHVCPTCTQDLSEEfrQEKIAEGEGELTNLQTG 320
294661473 241 QTQIAECVINgEDQTAN---IQKLRDGYTRLSMNVEQLQRLEVMYRKGGECPACKQPISPT--PERMEEIAENIKNGTQK 315
113200655 321 IEAFNTDIEQASEIVSMIADQSMKLKELTSDLSTIDRDYVRLEFENLRIQDEIIKLKVDTPNIDKEtvyLSEVKDEYTKT 400
109290030 320 LDKADIRINELNQKMIEFNEATVNFRDLQNKLNNEKQSIALYVNQAKAAKAAIERLQDERTDYTSE---IDQLGNNLRLK 396
37651524  320 LDKADDRIEELNQQMVEYNEATVRFRDVQTQLNNEKQSISLYVNQAKAAKAAIERLQAARPDYTGE---ITKLNDELVAK 396
33620623  314 LSLIDEKRVEYAEKANSFQTAQTKVLEIKRAIESQRANLTASVGRAKQIQKAIQELQKERVDNSEE---LAKLEHELVEI 390
58532930  321 YNDLMEAIGEEEKRFCKWDEISSSITENNNKISQCNYAIKSIRKSIDDVEKEIKELESGGGDKKEAytkLETLVANKKDL 400
66391506  316 LTLIKTKQDELQGIMNELLQQQRALNAMKTKYEALKGTLQNEVANAKRAQAIMEQASAEVVIDEEP---VKQLQQQETEL 392
66391846  320 LDKADDRIEELNQQMVEYNEATVRFRDVQTQLNNEKQSISLYVNQAKAAKAAIERLQAARPDYTGE---ITKLNDELVAK 396
61806323  321 LKKEQKAIEDVVSILDEANMLSMKAHELRTEISTFDRDLVRLDSENLSIEKELSNLVAAPKIEKEEh-vLKTLVDDFEDT 399
255929013 321 LEDLLDAISKEEERENEFTRLSKVVLELNASISQNNYQISSVRKSISDIEKEIKELEGSNPDKKAEfvkLEGLVKNKKDL 400
294661473 316 LTLIKNKQDQLQKIMDDLLTQQRTLNGLKSKYESLRGTLQNEVAAAKRVRAVMDKAQEDVVIDESP---VEKLREDEKEL 392
113200655 401 KEDCAGISKKLDEYQVVSNLLKDSGVKRQIIKKYIPVFNQLINKYLQSMDFYVNFTLDEEFNEVIKSRFRDEFSYASFSE 480
109290030 397 ISAKSDLEKEKHRRSLIADLLKDSGIKAVIMARYIPYFNNRISHYLDIMDADFGFTLDSEFKEVIKSSGRSTFSYNSFSQ 476
37651524  397 INTKSEIEREKHQRSMISDLLKDSGIKAVIMARYIPYFNNRIAHYLEIMEADFGFTLDAEFKEVIKSAGRSTFSYNSFSQ 476
33620623  391 TNEKSKLVLEKYHRGFVTEMLKDSGVKASIVKKYIPYFNDRIAYYLDIMEADYIFTLDEEFNETIKSRGRESFSYTSFSQ 470
58532930  401 SFQLSESKKDKDMLSVASGLLKDNGIKTRIIKKYLPIMNKLINHYLQGMDFYVNFTLDENFEETIKSRFRDQFSYASFSE 480
66391506  393 NDKRQGYVKEKYIRGIVTDMLKDSGVKASIVKRYIPYFNKQIAYYLNLLGADYQFTLDDEFNESIKSLGRDDFSYASFSQ 472
66391846  397 INTKSEIEREKHQRSMISDLLKDSGIKAVIMARYIPYFNNRIAHYLEIMEADFGFTLDAEFKEVIKSAGRSTFSYNSFSQ 476
61806323  400 KIDCGKVAQKIDEYHTVRSLLQDSGIKSRIIKKYVPIFNQLINKYLHSMDFFVNFTLDEEFNEEIKSRFRDDFCYASFSE 479
255929013 401 GTTYAEHKKDRDTLLVASQLLKDNGIKTRIIKTYLPAMNQMINQYLQRMDFYVNFTLNENFEEIIKSRYRDVFSYDSFSE 480
294661473 393 DSKRSGFVKEKYFRGIVTDLLKDSGVKASIVKRYIPYFNKQIAYYLDLLGADYQFTLDDEFNELIKSLGRNDFSYASFSQ 472
113200655 481 GEKQKIDLALLFTWREVARMKNSVATNLLILDEVFDSSLDTEGTNELLKILRSLgNETNVFVISHKgEILVDKFLRTLKF 560
109290030 477 GEKARIDMAVMFAWRDLASEVSGVDVNALFMDEVFDGPSDDDAQRSVFSIIENM-KA-NVFIISHG-EHDPQKFDRHIVM 553
37651524  477 GEKARIDMAVMFAWRDLASEVSGVDVNALFMDEVFDGPSDTDAQGAVFSIIDKM-KA-NVLIISHG-DHDPQNFDRHVKM 553
33620623  471 GEKARIDLAMLFTWRDVAGKVSGTNISLLVLDEIYDGATDVQGVKALDSIIDKL-DD-NVYIISHR-DHNPDDFSRHLKM 547
58532930  481 GEKARIDIALLLTWRSIAKLKNSVDTNLLILDEIFDGSLDQQGGSDLGWILRSFdDNISVFVISHK-EQMNDKYDRTFNV 559
66391506  473 GERARINLSILFTWRDVTSKVSGVDLSLLVLDEVFDGPLDKEGSFAIKSLLDSV-DG-NVIVISHQ-DLDPQDFDRHIIM 549
66391846  477 GEKARIDMAVMFAWRDLASEVSGVDVNALFMDEVFDGPSDTDAQGAVFSIIDKM-KA-NVLIISHG-DHDPQNFDRHVKM 553
61806323  480 GEKQKIDLALLFTWREVARMKNSAATNLLILDEVFDSSLDADSTNALLSILGTLgNNTNIFVISHKgDILIEKFHRTLRF 559
255929013 481 GEKSRIDIALLLTWRSIAKLKNSVDTNLLILDEIFDSSLDQQGGMDLSWILRNFdDNSNVYVISHR-ENLDGKFDRTLTA 559
294661473 473 GERARINLALLFTWRDVTSKISGVDLSLLILDEVYDGAIDREGSFAVKALLDGI-NG-NVIVISHQ-DLDPQDFDRHITM 549
113200655 561 EKVNDFSRMS 570
109290030 554 SKLGRTSVMN 563
37651524  554 SKLGRTSVME 563
33620623  548 VKRGRFTEMN 557
58532930  560 EKIKNYSVVR 569
66391506  550 SKVGRFTKPS 559
66391846  554 SKLGRTSVME 563
61806323  560 EKINDFSKLV 569
255929013 560 VKEKNFSVIQ 569
294661473 550 QKVGRFTKCT 559
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