3FVC,6VN1


Conserved Protein Domain Family
Glycoprotein_B

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pfam00606: Glycoprotein_B 
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Herpesvirus Glycoprotein B ectodomain
This domain corresponds to the ectodomain of glycoprotein B according to ECOD.
Statistics
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PSSM-Id: 425773
Aligned: 12 rows
Threshold Bit Score: 363.563
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3FVC_A 433 NPATVQIQFAYDSLRRQINRMLGDLARAWCLEQKRQNMVLRELTKINPTTVMSSIYGKAVAAKRLGDVISVSQCVPVNQA 512  Epstein-Barr virus (...
F5HB81 455 NLSYTQLQFAYDKLRDGINQVLEELSRAWCREQVRDNLMWYELSKINPTSVMTAIYGRPVSAKFVGDAISVTECINVDQS 534  Human herpesvirus 8 ...
P24905 425 NVFLSQIQYAYDKLRQSINNVLEELAITWCREQVRQTMVWYEIAKINPTSVMTAIYGKPVSRKALGDVISVTECINVDQS 504  Herpesvirus saimiri ...
Q66613 450 SVAASQVQFAYDNLRKSINRVLGELSRAWCREQYRASLMWYELSKINPTSVMSAIYGRPVSAKLIGDVVSVSDCISVDQK 529  Equid herpesvirus ty...
O36362 454 TILLTQIQFAYDTLRAQINNVLEELSRAWCREQHRASLMWNELSKINPTSVMSSIYGRPVSAKRIGDVISVSHCVVVDQD 533  Alcelaphine herpesvi...
Q6UDK4 470 SATFAMLQFTYDKIQKHVNMLIGNLLEAWCEMQNRQLVVWHEIKKLNPASLMTSMYGHAVAARLLGDVLAVSKCLEIPIE 549  Psittacid herpesviru...
6VN1_B 511 SVEFAMLQFTYDHIQEHVNEMLARISSSWCQLQNRERALWSGLFPINPSALASTILDQRVKARILGDVISVSNCPELGSD 590  Varicella-zoster virus
Q77MS3 457 SVQFAMLQFLYDHIQTHINDMFSRIATAWCELQNRELVLWHEGIKINPSATASATLGRRVAAKMLGDVAAVSSCTAIDAE 536  Marek's disease herp...
P08666 497 SIEFARLQFTYNHIQRHVNDMLGRIAVAWCELQNHELTLWNEARKLNPNAIASATVGRRVSARMLGDVMAVSTCVPVAPD 576  Human herpesvirus 2 ...
P28864 409 DILYVQLQYLYDTLKDYINDALGNLAESWCLDQKRTITMLHELSKISPSSIVSEVYGRPISAQLHGDVLAISKCIEVNQS 488  Human herpesvirus 6 ...
P27171 508 DISYAQLQFTYDVLKDYINDALRNIMDAWCRDQKRTAEMLKELSKINPSNILSAIYERPVTAKLAGDVIAMSECVKVDQS 587  Murine cytomegalovir...
F5HB53 478 NLVYAQLQFTYDTLRGYINRALAQIAEAWCVDQRRTLEVFKELSKINPSAILSAIYNKPIAARFMGDVLGLASCVTINQT 557  Human herpesvirus 5 ...
3FVC_A 513 T-VTLRKSMRVPGSEt-----MCYSRPLVSFSF----------------INDTKT----------------YEGQLGTDN 554  Epstein-Barr virus (...
F5HB81 535 S-VNIHKSLRTNSKD------VCYARPLVTFKF----------------LNSSNL----------------FTGQLGARN 575  Human herpesvirus 8 ...
P24905 505 S-VSIHKSLKTENND------ICYSRPPVTFKF----------------VNSSQL----------------FKGQLGARN 545  Herpesvirus saimiri ...
Q66613 530 S-VFVHKNMKVPGKEd-----LCYTRPVVGFKF----------------INGSEL----------------FAGQLGPRN 571  Equid herpesvirus ty...
O36362 534 S-VSLHRSMRVPGRDkt---hECYSRPPVTFKF----------------INDSHL----------------YKGQLGVNN 577  Alcelaphine herpesvi...
Q6UDK4 550 N-VVMQDSMRVPGDPs-----MCYVRPVLVFKYpaaadseamrgrvarpANNSDVggsqqageaeaqqhvgVHGQLGEHN 623  Psittacid herpesviru...
6VN1_B 591 TrIILQNSMRVSGSTt-----RCYSRPLISIVS----------------LNGSGT----------------VEGQLGTDN 633  Varicella-zoster virus
Q77MS3 537 S-VTLQNSMRVITSTn-----TCYSRPLVLFSY----------------GENQGN----------------IQGQLGENN 578  Marek's disease herp...
P08666 577 N-VIVQNSMRVSSRPg-----TCYSRPLVSFRY----------------EDQGPL----------------IEGQLGENN 618  Human herpesvirus 2 ...
P28864 489 S-VQLHKSMRVVDAKgvrsetMCYNRPLVTFSF----------------VNSTPEv---------------VPGQLGLDN 536  Human herpesvirus 6 ...
P27171 588 S-VKVLKDMRIFQDGkv---vNCYSRPLVVFQF----------------INSTKL----------------ESGQLGENN 631  Murine cytomegalovir...
F5HB53 558 S-VKVLRDMNVKESPg-----RCYSRPVVIFNF----------------ANSSYV----------------QYGQLGEDN 599  Human herpesvirus 5 ...
3FVC_A 555 EIFLTKKMTEVCQATSQYYFQSGNEIHVYNDYHHFKTIELDGIATL-QTFISLNTSLIENIDFASLELYSRDEQRA-SNV 632  Epstein-Barr virus (...
F5HB81 576 EIILTNNQVETCKDTCEHYFITRNETLVYKDYAYLRTINTTDISTL-NTFIALNLSFIQNIDFKAIELYSSAEKRLaSSV 654  Human herpesvirus 8 ...
P24905 546 EILLSESLVENCHQNAETFFTAKNETYHFKNYVHVETLPVNNISTL-DTFLALNLTFIENIDFKAVELYSSGERKL-ANV 623  Herpesvirus saimiri ...
Q66613 572 EIVLSTSQVEVCQHSCEHYFQAGNQMYKYKDYYYVSTLNLTDIPTL-HTMITLNLSLVENIDFKVIELYSKTEKRL-SNV 649  Equid herpesvirus ty...
O36362 578 EILLTTTAVEICHENTEHYFQGGNNMYFYKNYRHVKTMPVGDVATL-DTFMVLNLTLVENIDFQVIELYSREEKRM-STA 655  Alcelaphine herpesvi...
Q6UDK4 624 EILHGRTLIEPCKASHRRYFLFGANYLLYEDYKFIRQVNASEIEEIsSTFVNLDVTLLEDLDFVPLAVYTREELRD-VGT 702  Psittacid herpesviru...
6VN1_B 634 ELIMSRDLLEPCVANHKRYFLFGHHYVYYEDYRYVREIAVHDVGMI-STYVDLNLTLLKDREFMPLRVYTRDELRD-TGL 711  Varicella-zoster virus
Q77MS3 579 ELLPTLEAVEPCSANHRRYFLFGSGYALFENYNFVKMVDAADIQIA-STFVELNLTLLEDREILPLSVYTKEELRD-VGV 656  Marek's disease herp...
P08666 619 ELRLTRDALEPCTVGHRRYFIFGGGYVYFEEYAYSHQLSRADVTTV-STFIDLNITMLEDHEFVPLEVYTRHEIKD-SGL 696  Human herpesvirus 2 ...
P28864 537 EILLGDHRTEECEIPSTKIFLSGNHAHVYTDYTHTNSTPIEDIEVL-DAFIRLKIDPLENADFKVLDLYSPDELSR-ANV 614  Human herpesvirus 6 ...
P27171 632 EIMLGTFRTENCDTNSRKIFVVGTVGYEYRDYRFRNVTSLEHIDLV-DTLIGLDIEPLENTDFKVLELYSKGELRA-SNV 709  Murine cytomegalovir...
F5HB53 600 EILLGNHRTEECQLPSLKIFIAGNSAYEYVDYLFKRMIDLSSISTV-DSMIALDIDPLENTDFRVLELYSQKELRS-SNV 677  Human herpesvirus 5 ...
3FVC_A 633 FDLEGIFREYNFQAQNIaglrKDLDN 658  Epstein-Barr virus (strain B95-8)
F5HB81 655 FDLETMFREYNYYTHRLaglrEDLDN 680  Human herpesvirus 8 strain GK18
P24905 624 FDLETMFREYNYYAQSIsglrKDFDN 649  Herpesvirus saimiri (strain 11)
Q66613 650 FDIETMFREYNYYTQNLnglrKDLDD 675  Equid herpesvirus type 2 strain 86/87
O36362 656 FDIETMFREYNYYTQRVtglrRDLTD 681  Alcelaphine herpesvirus 1 strain C500
Q6UDK4 703 LNYDEVVRYNNLYNKMF----RDLDT 724  Psittacid herpesvirus 1 Amazon parrot/1997
6VN1_B 712 LDYSEIQRRNQMHSLRF----YDIDK 733  Varicella-zoster virus
Q77MS3 657 LDYAEVARRNQLHELKF----YDINK 678  Marek's disease herpesvirus type 1 strain MD5
P08666 697 LDYTEVQRRNQLHDLRF----ADIDT 718  Human herpesvirus 2 strain HG52
P28864 615 FDLENILREYNSYKSAL----YTIEA 636  Human herpesvirus 6 (strain Uganda-1102)
P27171 710 FSLDEIMREYNSQKQHI----RTLSA 731  Murine cytomegalovirus (strain Smith)
F5HB53 678 FDLEEIMREFNSYKQRV----KYVED 699  Human herpesvirus 5 strain Merlin
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