Conserved Protein Domain Family
Trnau1ap

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pfam17654: Trnau1ap 
Selenocysteine tRNA 1 associated proteins
This entry represents the C-terminal region of Selenocysteine tRNA 1 associated proteins (Trnau1ap also known as Secp43). Family members found in Eukaryotes have been shown to serve an essential role in the synthesis of selenoproteins, which have critical functions in numerous biological processes. Selenium deficiency results in a variety of diseases, including cardiac disease. Trnau1ap proteins harbor RNA recognition motifs (RRM) pfam00076 and Tyr-rich region found in the C-terminal. The Tyr-rich region (amino acids 185-225) is conserved among several mammals, including human, chimp, dog, cattle, mouse and rat. Furthermore, constitutive deletion of exons corresponding to the Tyr-rich region in mouse resulted in embryonic lethality.
Statistics
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PSSM-Id: 465438
Aligned: 38 rows
Threshold Bit Score: 85.4714
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_007565154  186 GGQ-TQSYssYNPtqtgY----YGSHaag-sqGGY-Yp-qWgGY-DQYSgynsSGYg-YnsGYnSGYnssynsgynynyg 255
XP_022538687  180 LNQ-HFSL--YQF----Y----ASQY------SNY-Y---S-GY-YQSA----ADY--D--PY-TDL------------- 214
Q503H1        183 ENQ-IWQYh-SDS----K----NASFi----nQYY-Yp-qNlSYlSTYD----WNYs-Ld-YL-NPS------------- 226 zebrafish
XP_003977295  195 RGD-YDQYsqYHQ---------QQMY------PGY-Ys-sW-GY-DQTG----YAYn-N--QL-YDYsq----------- 235
XP_007578931  192 SSS-GYRYg-YDQ----YdqyqQQAY------PGY-Ys-sW-GY-DQTA----GMYg-Y--TY-PQYdy----------- 236
EKC39949      242 YGN-YYGQn-Y------Y----NNQY------YNY-Y-----GY-NAYN----QYYdpYs-NY-NNYy------------ 278
XP_014769024  186 VPGtQSAQq-YSQ----Y----YQQY------QQYqYyqsWsAY-SQYY----SQFg-Y--PY-AGGy------------ 229
ESO88234      110 APGtSESV---------Y----YSQYnstsgpNQY-H---WgGYtVNYNt---NPCq-Q--EY-QGHy------------ 153
11_pfamImport   1 GGP-GQNYssYNQppssY----YGSNnsm-apGGY-Ys-qWgGY-DQIP----PTRt-H--AP-PAHgg----------- 52 
XP_019121610  196 SGY-RNNYdqYNH----Yq---QQAY------PGY-Yp-sW-GY-DQTG----GGYg-Y--NY-QQYdy----------- 238 large yellow c...
XP_007565154  256 aygypPSghmmppppvgmppmstdmtgaV--Q----GQEQTEdaDDDTtE---EPIPECDVELWNKDFMQHSEELYDALM 326
XP_022538687  215 -----PQd-------------------sE--Q----SYEEME--DCDL-E---DPNLQPNVMEANRSFMEDSEELYDALN 258
Q503H1        227 -----QNt--------------------T--PvdvtQSEQTE--DDDL-E---YPDSEINVTEANETFMAQSEELYSALI 273 zebrafish
XP_003977295  236 ----yPA---------------------A--Q----ESEPLP--DDGL-E---EPMVELNVVEANQKFMEHSEELYDALM 278
XP_007578931  237 ----sQYa-------------------qV--Q----ESEAVP--DEEAvE---DPSLVVDVVETNRSFIDLSEELYDAII 282
EKC39949      279 -----------------------------------eTQQDED--MEAL-E---EPEVEVDVFRYNKDYMEQSEEIFDVLE 317
XP_014769024  230 ----tTDh--------------------V--Q----DYYDQG--TDEEmEmleDPILEIDVDKVNAEFIEQSEEIFEALD 277
ESO88234      154 ---------------------------qP--Q----HDDEV----DPL-E---DPQLEVDVEKENREFMISSEAFFNALD 192
11_pfamImport  53 ----aPA---------------------V--Qr--hVWSCRG--ESQE-----QSIPECDVEQWNRDFVERSEEFYEALM 96 
XP_019121610  239 ----tQYp-------------------pPleS----ESETIQ--DSEL-E---DPSLELDVVEANRKFMELSEELYDALI 285 large yellow c...
XP_007565154  327 NCRWEP------LDSVDSPIP 341
XP_022538687  259 SCFCQPpe---sWDGITCSVM 276
Q503H1        274 GCFFQPpe---sWDGVTCSAS 291 zebrafish
XP_003977295  279 ESRWQTaefsaeQDYVTSSLP 299
XP_007578931  283 DCHWHPpefsanQDYIVSNLP 303
EKC39949      318 LSRWTP------LDSVNSKLP 332
XP_014769024  278 DSRWQP------IDNVMTTLS 292
ESO88234      193 QSRWHP------IDHVTSQLH 207
11_pfamImport  97 SSRWEP------LDSVDSPVP 111
XP_019121610  286 ECHWQPaelsteQDFMTSSLP 306 large yellow croaker
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