Conserved Protein Domain Family
7tmA_OR1A-like

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cd15235: 7tmA_OR1A-like 
olfactory receptor subfamily 1A and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors
This group includes human olfactory receptor subfamily 1A, 1B, 1K, 1L, 1Q and related proteins in other mammals, sauropsids, and amphibians. Olfactory receptors (ORs) play a central role in olfaction, the sense of smell. ORs belong to the class A rhodopsin-like family of G protein-coupled receptors and constitute the largest multigene family in mammals of approximately 1,000 genes. More than 60% of human ORs are non-functional pseudogenes compared to only about 20% in mouse. Each OR can recognize structurally similar odorants, and a single odorant can be detected by several ORs. Binding of an odorant to the olfactory receptor induces a conformational change that leads to the activation of the olfactory-specific G protein (Golf). The G protein (Golf and/or Gs) in turn stimulates adenylate cyclase to make cAMP. The cAMP opens cyclic nucleotide-gated ion channels, which allow the influx of calcium and sodium ions, resulting in depolarization of the olfactory receptor neuron and triggering an action potential which transmits this information to the brain. A consensus nomenclature system based on evolutionary divergence is used here to classify the olfactory receptor family. The nomenclature begins with the root name OR, followed by an integer representing a family, a letter denoting a subfamily, and an integer representing the individual gene within the subfamily.
Statistics
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PSSM-Id: 320363
Aligned: 29 rows
Threshold Bit Score: 405.838
Created: 4-Dec-2013
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding pocket [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                  #  ##           ######
Q9P1Q5        24 EDFFYILFLFIYPITLIGNLLIVLAICSDVRLh-NPMYFLLANLSLVDIFFSSVTIPKMLANHLLgsKSISFgGCLTQMY 102 human
NP_001000824  24 QPVIFGVILTMYLMSVLGNTLLVLVACSDPKLq-TPMYFLLSQLSLIDISLTTITIPQMLVHTFSvdRSISYnRCMTQLF 102 Norway rat
Q15612        24 QIPLFLVFSLMYAINISGNLAIITLILSAPRLh-IPMYIFLSNLALTDICFTSTTVPKMLQIIFSptKVISYtGCLAQTY 102 human
XP_006890799  24 QPFLFGLFLAMYLVTIMGNLFIILAIGFDVHLh-TPMYFFLANLSVSDIGFISTTVPKMLDNIGSgsKLISYgECLAQLY 102 Cape elephant s...
XP_001520929  23 QRLLFVLFLGLYLVTVVGNLLIVLTIRTDSRLh-SPMYFFLANLSLVDICFSCTTVPSLLGTLFTghQDISYgGCLAQMY 101 platypus
XP_007438366 197 NILLFAIFLTMYVITVLGNLIIILAIRLDSHLh-TPMYYFLSNLSLVDICFTSTTVPKMLAGEFSgkRKISYgGCLSQMY 275 Burmese python
XP_006265167  24 QGPLFALFLAMYLASALGNATILAAIHMNNHLlhAPMYFFLNHLSLVDLGLTSAVVPKLLAGTLTgdWGISYaGCLAQMY 103 American alligator
XP_001370627  24 QPVIFGVIFAMYLITIVGNSMIITVTWIDPKLk-TPMYFLLSQLSIIDICFTTITVPQLLIHTFSrsKTISFtQCMTQVF 102 gray short-tail...
XP_007440270  24 QPLFFLLFLLMYSAGLLGNTMMLLLITLDVQLq-TPMYFLLRSLSVIDLGFISVTVPQMLVHIVSasRTIPFySCMAQFF 102 Burmese python
XP_007438367  24 EGPLFSLFLFMYLLTFLGNSLIILLILFDAHLcgLPMYFFLIQLSLVDICFSSATTPKMLEILLSknKTISYtECLLQLY 103 Burmese python
Feature 1         ##  #                                            # #####                       
Q9P1Q5       103 FMIALGNTDSYILAAMAYDRAVAISRPLHYTTIMSPRSCIWLIAGSWVIGNANALPHTLLTASLSFCgnqEVANFYCDIT 182 human
NP_001000824 103 FFMAVGSMEGHLLAAMAYDRYVAICDPLRYSAIISHRLCLRITLTSWVVVSLNSLLYSVLVTRLTFCg-nQVTHFFCDIT 181 Norway rat
Q15612       103 FFICFAVMENFILAVMAYDRYIAICHPFHYTMILTRMLCVKMVVMCHALSHLHAMLHTFLIGQLIFCadnRIPHFFCDLY 182 human
XP_006890799 103 FFGLFADLDNFLLAVMALDRYVAISYPLHYATRMNSQRCILLVAGSWVVTTFHALLHTLLVTRLSFCgpsIIPHFFCDLY 182 Cape elephant s...
XP_001520929 102 FFIAFGITESCLLAAMAYDRYLAICNPLLYSVVMSPQRCVLLVVTCWLVSHLHSLLHTLLMTQMTFCasrEIPLFFCDVF 181 platypus
XP_007438366 276 FFIAFGVTDSFLLASMALDRYVAICQPLRYATMMRKQICLSLVVTSWLASHLHSLLHTLLMSRLSFCassHVPHFFCDVF 355 Burmese python
XP_006265167 104 FFIAFGITDSFLLAAMALDRYMAVCHPLRYAIIMSPRFCWALVTSSWLVAHLHSLLHTLLMSRLSFCatrHVACFFCDVF 183 American alligator
XP_001370627 103 FFVAVGNMEGYLLATMAYDRYVAICNPLRYGAIVTQKFCVSIVLVSWLLMFLNSLLHTILVSRLNFCs-nHILHFFCDLP 181 gray short-tail...
XP_007440270 103 FFYVFGVTDLLLVSVMALDRYVAICNPLHYASVMNQKVCGQLVAGCCIISTLHSMLHAGLLLRLTYRgknHLPHYFCDHQ 182 Burmese python
XP_007438367 104 LLITLANVDGFLLGSMAYDRYVAICFPLNYVAIMTRKRCLELVAGSWLLPCLHSLLHTLLMSQHSFCgslEISHFFCDIR 183 Burmese python
Feature 1                    #  ### ### ##                                            #  ## ##  #
Q9P1Q5       183 PLLKLSCSDi-HFHVKMMYLGVGIFSVPLLCIIVSYIRVFSTVFqvpstKGVLKAFSTCGSHLTVVSLYYGTVMGTYFRP 261 human
NP_001000824 182 PLLKLSCTRpvLNEMLIFTEGVVVVVSPFFFILGSYVRIGFAIAhmhsiTALRKALSTCGSHILVVLLLYGSVIRMYLKP 261 Norway rat
Q15612       183 ALMKISCTStyLNTLMIHTEGAVVISGALAFITASYACIILVVLripsaKGRWKTFSTCGSHLTVVAIFYGTLSWVYFRP 262 human
XP_006890799 183 PFLSISCSSthLNTLMIQTEGVIGINGALIFTIASYTCIITAVLripsaNGKWKAFSTCGSHLTVVAIFYGTLTWVYFRP 262 Cape elephant s...
XP_001520929 182 PLLKISCSDphINFLVVYTEGAVIVNSALLMVLASYAHIVPAVLrvpsaHGKRKAFSTCSSHLAAVGLFYGTVIWVYFQP 261 platypus
XP_007438366 356 PLLKISCSNtaLNTLVVHSEGAFIVNGALMVIGLSYAHILMAVLrvpsaKGKKKAFSTCGSHLTVVSLFYGTVIWVYFQP 435 Burmese python
XP_006265167 184 PLLKLSCSNarLNVLVVHTEGAMVVNGALLFILLSYTRIAAAVLkvpsaAGKRKAFSTCGAHLTVVGLFYGTIIWVYFQP 263 American alligator
XP_001370627 182 PLMQLSCSRpfINEIIILTEGVAATLSPFVFILASYVCIAVTVLglrstAGLRKAVSTCGSHIVVVTLFYGTIIRLYFQP 261 gray short-tail...
XP_007440270 183 PLLQLSCSDisVNEAVIFFEGVIIILGPFVFIILTYIRIVATIMkf-tsLGRRKAFSTCGSHLTIVILFYGAIIAVYFLP 261 Burmese python
XP_007438367 184 ELLSLSCSDvsIHQMIIFIEGASVTLSPLVCILLSYVQILSNILkipnaQGKYKAFSTCGSHILSVAFYFGSIMGVYFQP 263 Burmese python
Feature 1               ## ###  #  ##                     
Q9P1Q5       262 Lt---nYSLKDAVITVMYTAVTPMLNPFIYSLRNRDMKAAL 299 human
NP_001000824 262 Ssi--yELDQDRQIAIFYTLITPMLNPLIYSLRNHEVKGAV 300 Norway rat
Q15612       263 Lss--ySVTKGRIITVVYTVVTPMLNPFIYSLRNGDVKGGF 301 human
XP_006890799 263 Lss--ySVAQARIVTVMYTVVTPMLNPFIYSLRNGDVKVTF 301 Cape elephant shrew
XP_001520929 262 Sss--fSSERDTIATVIYTTITPLLNPFIYSLRNRDLHRAL 300 platypus
XP_007438366 436 Ssn--fSAKTDTLAAIMYTMVTPMLNPFIYTLRNDRMKEAL 474 Burmese python
XP_006265167 264 Sas--fSAEKDLLAAIMYTMVTPMLNPFIYTLRNDEMKGTL 302 American alligator
XP_001370627 262 Vss--yTLDRDRQVAVFYTVVTPMLNPIIYSLRNQEVKGAL 300 gray short-tailed opossum
XP_007440270 262 Tss--ySSQRGSFFALVYTVITPMSNPYIYSLRNKEVKDAL 300 Burmese python
XP_007438367 264 SspersTSVGTFIASVIFMVITPMLNPVIYSLKNNEVRNAM 304 Burmese python

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