3TKA,1WG8,1M6Y


Conserved Protein Domain Family
RmsH

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COG0275: RmsH 
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16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]
16S rRNA C1402 N4-methylase RsmH is part of the Pathway/BioSystem: 16S rRNA modification
Statistics
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PSSM-Id: 440044
Aligned: 931 rows
Threshold Bit Score: 236.109
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3TKA_A        36 M---ENYKHTTVLLDEAVNG-LNIRPDGIYIDGTFGRGGHSRLILSQLgEEGRLLAIDRDPQAIAVAKTId---DP--R- 105
WP_015424530   1 M-----TFHTPVMVKECLSY-LNLRAGYIYVDATTGGGGHSLAMLKAq-PEIKLYCFDQDSEAIEEAGKIlh-nyN--N- 69 
WP_068516626   1 M-----IHHEPVLLEEVLKW-LKIEEGKIFVDGTLGLGGHSSAILKRAkEDALLYAFEWNEDTLKLAEENlrpfQG--R- 71 
WP_013756019   1 MsnySKDIHIPVLLNEVLEN-SNLAPGKVVVDGTIGAGGHSFNFLKKIlPGGFLLGFDKDIEAVKLAVEKlsstFD--Rn 77 
WP_014453711   1 M----EIHHIPVLLNETIEL-LNLKENSIVVDATLGEGGHSVEILKRI-PKGLLIGIDMDYETIERARQRllqvRD--N- 71 
WP_014730459   5 Y----DERHRSVMIHEALHYlLGGRLTGTYIDCTAGEGGHIRAMLEATeGQAKIIGLDVDSEVLNIAEQNlkdyRE--S- 77 
WP_015869235   5 Y----NESHRSVMVQETLHY-LRPTYNGVYVDGTLGEGGHTKAIIEATsGKCKVIGLDIDEEVLAIAEQNlkefKE--N- 76 
YP_002249141   1 Md--yKKIHIPVMVKEVIQL-LNP-YGGIYVDATLGCGGHSLAILKRLsPDGRLIGIDRDESAIFYANRIld--dS--R- 71 
WP_012003468   1 M----EIVHVPVMVKEVLSY-FSN-LRGVFLDCTVGAGGHSEAILENI-KGSVVIGIDVDEEILSVAKQRlkkyESegR- 72 
WP_013909731   1 M-----YHHEPVLLKEVLEW-LNVKENKIYVDGTVGLGGHSSAILEASkPSGILYGFEWNEDSFKIAQERlkkyGE--R- 71 
3TKA_A       106 -FSIIHGPFSALGEYVAERDlIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMD-PTRGQSAAEWLQTAEEADIA 183
WP_015424530  70 -VELIQANFKQLRTELAYRK-IKGIDGILFDLGVSSHQLECTERGFSFEKDAPLDMRMD-KNLKNSAYNAVNELDTKTLT 146
WP_068516626  72 -VKIIPKNFVYIKEVLEKEG-V-LADAILLDLGLSSFLIEGSGRGFTFQKDEPLDMRMS-LELELTARDILNRFSEREIA 147
WP_013756019  78 sFTIFNDKFENFVKYLNFLP-YGKFDLFFLDLGLSTMQIKESNRGFSFMKDEKLDMRMD-LKEKMTASDWLNSASEEEME 155
WP_014453711  72 -FVIVPGNFKEINSLILPFA--KSVTHILADLGVSSLQLEDESRGFSFMKEGPLDMRMCrPCTRYTAYDIINNFEESELR 148
WP_014730459  78 -VELFNLSYVDFEIALRQAG-VEKVDGFLLDVGVSTFQLKAKGRGFSYELDEPLDMRMN-LSQKRTAADVVNSYREDELS 154
WP_015869235  77 -VELFNVSYVDFDLVLESLA-VDKVDGFLLDIGVSTYQLKAKGRGFSYEIDEPLDMRMS-LSGSVTAADVVNSYPEKELA 153
YP_002249141  72 -VILRKASFSHLKEVLSELN-IEKIDGIIFDLGVSMLQLKDFERGFSFHSEERLDMRMD-QTEPLTAWDVVNKYPEQKLT 148
WP_012003468  73 -AKLLKATYVEAQRVLSQLG-VKAVNGIIMDLGVSTLQLMKGERGFAFSSDGPLDMRMD-KTQRLTAYDIVNFWQENQLR 149
WP_013909731  72 -VKLFNKNFVFIKEILQKEG-V-LADGILLDLGISSFLLEGSKRGFSFQKDEPLDMRIN-LSINLTAKDILNNYDFVSLS 147
3TKA_A       184 WVLKTYGEE-RFAKRIARAIVERNREQPMTRTKELAEVVAAAT-PVk---D-KFKHPATRTFQAVRIWVNSELEEIEQAL 257
WP_015424530 147 NIFREYGEE-QNAYRIAKAI--EKSSKPIKTTRELAKIVESIA-GKg--tK-ASLKTKVRVFQALRIYVNKELESLSLAL 219
WP_068516626 148 EILER-GEV-PRATAFARFIVQKRRIKPLETTFDLVSVVKEFYrPl---kR-KEKDLLAIVFQSIRMEINRELENLEKAL 221
WP_013756019 156 EVFRKYGEE-PKSRKLAKMISLRRREKPFESTMDLAQLVKKIY-PY------GRRHPATRIFQAIRIVINDEIEHLEATL 227
WP_014453711 149 DIILYYGED-PFASKIAKRITEERKKHPIETTTQLAEIVKSVY-PKg----yYRIHPATRTFQALRIYINRELDNLKGFL 222
WP_014730459 155 RIIFEFGDEkRFARKIARSIVSRR---PLFTTKDLHDAIKAAI-PPaeryK-RRRHFATKTFQAVRIEVNQELENIESTL 229
WP_015869235 154 RIIFEYGEEkRYARRIARKIVERR---PIQTTIQLVEAIKAAL-PPqerfR-RKRHYATRTFQAIRIEVNGELKGLRTAL 228
YP_002249141 149 QIFRDYGDE-PFARRIAREIIRQRGKKTIDTCKELADLVKKTV-Pr----H-GRLHPATQIFQAIRIEVNREFEELRQGL 221
WP_012003468 150 RIFFEYGEEkRYAGRIARFIVKNR---PVETTAKLVEVIARAL-PEke-rRfRRRHFATRVFQAIRIAVNNELENLRNFL 224
WP_013909731 148 NVFKK-GEV-PKADKFAKFICEKRKKKPFETTQDLVKAIKEFYk------T-SKKDLLAVIFQSLRIEVNKELENLEIAL 218
3TKA_A       258 KSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKlggrQLRALGK--LMPGEEEVAENPRAR 335
WP_015424530 220 QDAINLLNPQGRIVVISYHSLEDRIVKQTFKKAEQKNEEQSVLPNSNKNHQQ----QLIILTKkpVTATEEEILVNPRSR 295
WP_068516626 222 KDLPEVLRPGGRLGIISFHSLEDRLVKRAFKNDD----------------------RLLNLTKkpVTPSPEEVKRNPRAR 279
WP_013756019 228 REATNHINSLGRIIVISFHSGEDRVVKWTFKNLEKE---------------G----RGRVITKkpIIASESETKENPSAR 288
WP_014453711 223 ENAPTVLESMGRIAIITYHSLEDRLVKQSFKNN------------------P----TLKLVNKhvIKPKEEEIATNRRAR 280
WP_014730459 230 RKIPGFLNQGGRIVIISFHSLEDGIAKRVFREKSE----------------S----ELKILTKkpVQPSKEEVELNLRAR 289
WP_015869235 229 EKFPNYLKPGGRIVIISFHSLEDRTVKHFFREQDG----------------V----TLKILTRkpVVPSVEEVSENPRAR 288
YP_002249141 222 LQAVELLNSGGRICVISYHSGEDRVVKNFFREEEQ---------------KG----NLRILTKkpLLPSLEEVAKNPSAR 282
WP_012003468 225 VQVPDILNQNGRIIVISFHSLEDRIVKEAFRSIQ----------------------ELDVLTRkpVRPSLEEVRENPKAR 282
WP_013909731 219 QKLPDVLKSSGRIVVISFHSLEDRIVKTSFKND------------------P----RIKVLTKkpITPSEEEIKRNPRAR 276
3TKA_A       336 SSVLRIAERT 345
WP_015424530 296 SAKLRAGEKV 305
WP_068516626 280 SAKLRVAERr 289
WP_013756019 289 SAKMRVWEAI 298
WP_014453711 281 SAKLRVAEKV 290
WP_014730459 290 SARLRAAERI 299
WP_015869235 289 SAKLRAAERI 298
YP_002249141 283 SARLRGGEKI 292
WP_012003468 283 SAKMRIAERk 292
WP_013909731 277 SAKMRVGEKI 286
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