Conserved Protein Domain Family
rumA

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PRK13168: rumA 
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Statistics
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PSSM-Id: 237291
Aligned: 259 rows
Threshold Bit Score: 632.962
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
264679193   1 MQFFAVVgsrvwgglrqsgtmsesrdnkipenlpevpsdaPAL-----PEGWLEVLSMDMDAQGVARkPDGKVVFIDGAL 75 
114562226   2 AQFFQAK---------------------------------PNKskqlsAKLSLSVTQLDHLGAGIAQ-HQGKIVFIPGVL 47 
170727692   2 AQFFKAK---------------------------------PNSskqlsAKVSLQVTRLDHLGAGIAQ-HNGKVVFIPGVL 47 
294141950   2 AQFFKAKpns----------------------------skQMS-----PKISLDVTQLDHLGAGIAH-HDGKIVFIPGAL 47 
119774169   2 AQFFKAK---------------------------------PNQakklsQKIALKVQRLDHLGAGIAE-HQGKVVFIPGAL 47 
157961009   2 AQFFKAKpnr----------------------------skQLS-----SKLSLKVTQLDHLGAGIAH-HDGKIVFINGAL 47 
91792550    2 AQFFKEKa-------------------------------nKSKql--sPKLSLNVTQLDHLGAGMAQ-HQGKVVFIPQAL 47 
157374425   2 AQFFKAK---------------------------------PNSskqlsAKVTLEVTKLDHLGAGMAQ-HQGKIVFIPGAL 47 
167623152   2 AQFFKAK---------------------------------PNTskqlsSKLSLKVTQLDHLGAGIAH-HDGKIVFINGAL 47 
212634201   2 AQFFKAK---------------------------------PNRskqlsSKLSLNVTQLDHLGAGIAH-HQGKIVFINGAL 47 
264679193  76 TGEIVSANTHRKKNNWEAATLTEIHRESSQRVTPGCPNFGLhagaCGGCKMQHLHVAAQVAIKQRVLEDNLWHLAK---V 152
114562226  48 PGETATVQFVEQKKSYAKAKLISIESASVNRIKPHCPHYQQ----CGGCDLQHMDTNAQREHKQTALVDLISKLSSakaI 123
170727692  48 PGEKAMVQLTEQKKRYSRAKLLNLETHSIDRVEPKCAHYHQ----CGGCDLQHLSLEKQRLHKESALVSLMAKLSH---T 120
294141950  48 PGEHVKGQLTEQKKRHARAKLQEIVTPSQYRVTPKCAHYDQ----CGGCDLQHLSIDKQRNHKQDALVGLMAKLGQ---A 120
119774169  48 PGETVEVQLTEQKKNYARAKLQRVSEASPDRQTPPCPWYGK----CGGCDLQHLSLPRQLEYKRQALGDIVSRSAAqtvt 123
157961009  48 PDETVSVQLTEQKKKFSRGKLLKIEKRSTERVTPPCPHFDK----CGGCDLQHLDIEAQRKHKANTLVDLVNKFAQ---T 120
91792550   48 PGERVSVQLTDQKKSFAKAKLIKIEQQSPERADASCPHYGH----CGGCDLQHLALDAQQNHKQQSLNELMVKFSGspvI 123
157374425  48 PNEKVTVQLTEQKKRHARAKLLKIESDSNDRVEPKCPHYQQ----CGGCDLQHLSIDKQRSYKQSALVDLMAKLSH---T 120
167623152  48 PGETVSVQLTEQKKKFARAKLLKIDKASAQRVSPLCPHFDK----CGGCDLQHLDIDAQRKHKASTLVDLVNKFAQ---T 120
212634201  48 PGETVQVQLTEQKKKFSRAKLLKVETASGERVSPLCIHYEK----CGGCDLQHLNVESQRAHKAKALQELVAKFAQ---T 120
264679193 153 KPETLlRPIEGPAWGYRFRSRLSVRYVAKKGKVLVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDARETCPQ 232
114562226 124 DADIVaDPIVGEAWHYRRRARLATLFDKNTQRLQLGFRAGNSNKIVSIQQCPVLSESLSALITPLAANLNQLKAKASLGH 203
170727692 121 EAEALvPAIIGEQWHYRRRARLATFYHQETKRTTLGFRAQSSKEVIDISSCPVLAKSLSELISPLSKLLNQLASRRALGH 200
294141950 121 EAETLaPALIGKEWDYRRRARLATFYDRKTKHTTLGFRAKASKQVVKIEHCPVLAAPLSDLILPLSQVLNRLASKKALGH 200
119774169 124 ---vntDEVSGDSWHYRRRARLATLLDKETNQLALGFREEGSKSVVGIDSCAVLARPLSELISPFATLLNRLKGKQRLGH 200
157961009 121 QASEVcAPLSGDAWHYRRRARLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDLAFMLNQLSGKKALGH 200
91792550  124 DPQVQaAPLVSPPWHYRRRARLATYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARLKAKASLGH 203
157374425 121 EAESLaPALIGQEWDYRRRARLATHYNKESKQITLGFRASASKQVINIDVCPVLAKPLSDLIAPLSLLLNQLSGKKALGH 200
167623152 121 QAGEVcDTLSDNAWHYRRRARLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDLAFMLNQLSGKKALGH 200
212634201 121 TASQVcETLSDSPWHYRRRARLATWFDKKTKHISLGFRASSSSDVVEIQSCVVLAKPLSALIPELAFLLNQLSGKKALGH 200
264679193 233 IEVACGDHVTALVLRHLEPLSDADKQRLRDFAAEQNVQWWLQPKGPDTVHLmee--------------ggtQLSYGLPDF 298
114562226 204 VELTQADNGNFAVLRVTKVLPASDIRWLTGFAEKHQLNLLLQDDAGQLTQLfpllpa--------gdeaiaLPYYHLAQE 275
170727692 201 VELIDVDNGQFVVVRATKELSDKDKEKLLSFAQEHKVNLIVQGNEGELLVIkg----------------pkELPFYTLNS 264
294141950 201 VELIEASNGHFVVIRMTQSMADKDTEKLREFALSHKVSLIVQGNESDLTLIgdeakt--------lvigsnELPYYELDN 272
119774169 201 LELTQAANGLFAVLRVTAPLAQSDKKLLSAFADERQIALLLQGNEGELEFLssghe-----------------lpyyqLD 263
157961009 201 VELTQADNGNFVVLRVTKVLSDKDKARLVEFANKHEVIVLLQDDDAQCEHLngage---------------qpfyaLSGS 265
91792550  204 LELTQADNGTFAVLRVTKVLPAADIRALASFALTQGINLLLQDDSGALTDVmtmapaedegatqveqsaltlpeyaLSQG 283
157374425 201 LELIDADNGYFAVLRMTKALSDKDAKKLTAFANEKSISLIVQGNEGEFTILgdrne-----------------lpyyaLD 263
167623152 201 VELTQADNGNFVVLRVTKALSDKDKARLVEFANKHQVIVLLQDDDAQCEHLngage---------------qpyygFDDN 265
212634201 201 VELTLADNGIFVVLRVTKALSDKDRQRLAEFGASHSLNMLLQDDDANTESLsghgq---------------qpfysFNDS 265
264679193 299 GITMPFKPTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMA-----REVLGIEGSETLVKRSHEN 373
114562226 276 AVRCSFTPGNFVQVNGAINQAMVDQAIEWLDPQSGERILDLFCGVGNFSLPLALKA-----AEVIGVEGVPEMVQQAKQN 350
170727692 265 DIKLSFTPGNFVQVNGEINRAMVDQAVQWLDVKADERVLDLFCGVGNFSLPLAKSG-----AEVIGVEGVPEMVAQARIN 339
294141950 273 GIKLSFTPGNFVQVNAEINNAMVNQAVDWLSVEPHERVLDLFCGVGNFSLPLAKKG-----ASVIGVEGVPEMVQQAKLN 347
119774169 264 GLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLFCGVGNFSLPLAKQG-----AEVVGVEGVPEMVAQAKQN 338
157961009 266 DIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGERVLDLFCGIGNFSLPLAKDG-----AEVIGVEGVVAMVEQARVN 340
91792550  284 QVSCQFTPGNFVQVNAEVNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGqnldgLEVIGVEGVPEMVQQAREN 363
157374425 264 DVKLNFTPGNFIQVNAAINESMVKQAVDWLSVKPNERVLDLFCGVGNFSLPLAKSG-----AEVIGVEGVPEMVKQAREN 338
167623152 266 QVKLNFSPGNFIQVNAQVNQAMVSQAVEWLSPKADERVLDLFCGIGNFSLPLAKDG-----AEVIGVEGVQAMVEQARIN 340
212634201 266 DAELKFSAGNFIQVNASVNQAMVNQAVDWLAPQANERVLDLFCGIGNFSLPLAKSG-----AEVIGVEGVPAMVEQATVN 340
264679193 374 YAANNVTRseddklasTSFVARNLFEMTPAMLIAdGNSDKWLVDPPREGAFALSKALADIhqirigakqtgvaseeqpdl 453
114562226 351 AIDNQLDN--------VTFYHADLSADLSTQTWL-GKIDKLLLDPARAGAFESLQWLQKM-------------------- 401
170727692 340 AKQSDLSD--------VTFFHTDLSADLSKEPWL-GKVDKLLLDPARAGAFESLQWLKKM-------------------- 390
294141950 348 ATLSQLDN--------VSFFHTDLSADLSKESWL-GKVDKLLLDPARAGAFESLQWLKKM-------------------- 398
119774169 339 AAINGLDN--------LSFYCADLSEDLAAEPWL-GKIDKLLLDPARAGAYESLKWLKKM-------------------- 389
157961009 341 AKQSGLDK--------VAFYHADLSADLSKEPWL-GKVDKMLIDPARAGAYESMQSLKKL-------------------- 391
91792550  364 AKRNNLAN--------LSFYHADLSADLSNEKWL-GKIDKLLLDPARAGAFESLQWLQKM-------------------- 414
157374425 339 AADSGLDN--------VSFFHTDLSADLSKETWL-GKVDKLLLDPARAGAFESLQWLKKM-------------------- 389
167623152 341 AKQSGLDK--------VSFYHADLSADLSKEPWL-GKVDKMLIDPARAGAYESMQSLKKL-------------------- 391
212634201 341 AKGAALDK--------VSFYHADLSADLSQQPWL-GKVDKMLIDPARAGAYESMLSLKKL-------------------- 391
264679193 454 lpplpegqeswqFPKRIVYVSCNPATLARDAGLLVhQAGYRCVAAGVVNMFPHTAHVESMAVFER 518
114562226 402 ------------QPKKVVYVSCNPASLARDSSVLL-ASGYRIAQVGLVDMFPQTHHIEAMVLFEL 453
170727692 391 ------------KPKSIVYVSCDPSSLARDSEPLL-KHGYKLKKLGLVDMFPQTHHIEAMALFEL 442
294141950 399 ------------KPKSIVYVSCDPATLARDSEPLL-KHGYKLTKLALIDMFPQTHHIEAMALFEl 450
119774169 390 ------------KPAKVLYVSCNPASLARDSVLLF-EAGYQLTRLGLVDMFPQTHHSEGMALFEL 441
157961009 392 ------------KPKALVYVSCNPASLARDSEVIL-KQGYQLKKIGLIDMFPQTHHLESMALFEL 443
91792550  415 ------------KPKKVVYVSCNPASLARDSSVLL-SQGYQLKQLSMIDMFPQTHHIEAMALFEI 466
157374425 390 ------------KPKAIVYVSCDPSSLARDSEPLL-KHGYKLKKLGLIDMFPQTHHIEAMALFEL 441
167623152 392 ------------KPKALVYVSCNPASLARDSEVIL-KQGYQLKKIGLVDMFPQTHHLESMALFEL 443
212634201 392 ------------KPQALVYVSCNPASLARDSEVIL-KQGYRLTKIAMVDMFPQTHHLESMALFEL 443
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