1VS5


Conserved Protein Domain Family
rpsD_bact

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TIGR01017: rpsD_bact 
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ribosomal protein S4, bacterial/organelle type
This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 200066
Aligned: 15 rows
Threshold Bit Score: 227.957
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1VS5_D         3 RYLGPKLKLSRREGTDLFLK--SgvRAIDTK---CK--IeqAPGQHGA--RKPRLSDYGVQLREKQKVRRIYG-VLERQF 72  Escherichia coli
P56011         3 RYRGAVERLERRFGVSLALKg-E--RRLSGKsalDKraY--GPGQHGQ--RRAKTSDYGLQLKEKQKAKMMYG-ISEKQF 74  Helicobacter py...
O06325         3 RYTGPVTRKSRRLRTDLVGG--D--QAFE-K---RP--Y--PPGQHGR--ARIKESEYLLQLQEKQKARFTYG-VMEKQF 67  Mycobacterium t...
P48939         3 RYRGPRLRIVRRLG-ELPGL--S--RKSP-R---RA--Y--PPGQHGQ--ARRKRSEYAIRLEEKQKLRLNYG-ITEKQL 66  Synechocystis s...
P51219         3 RYRGPRVRISRRLG-DLPGL--S--RKAI-K---RP--Y--PPGEHGQ--KPRKPSEYAVRLEEKQKLRFNYG-LSEKQL 66  Porphyra purpurea
O51560         3 RKQIAKGKLVRRFGINIFEQpkY--DKILKK---KP--H--PPGMHGKa-RKAKITEYGKQLIEKQKIKFTYG-VSERQL 71  Borrelia burgdo...
P46775         2 KYTGSIFKRSRRLGFSLLEN--N--KEFS-KgkkRK--T--IPGQHGNrfRSSTMSGYAQQLQEKQRMQYMYG-ITDKQF 71  Mycoplasma pneu...
P47553         2 KYTGSIFKRSRRLGFSLLEN--N--KEFS-KgkkRK--S--IPGQHGNrfRSSTLSGYAQQLQEKQRMQYMYG-ITDKQF 71  Mycoplasma geni...
Q9ZDI3         3 KIVRSKYKASRRLGVSLWGD--S--KDAFNT---RN--Y--RPGQHGQn-TMIKTSDYGLHLKAKQRLKCYYGrVTEKQF 70  Rickettsia prow...
WP_005693170   3 RYLGPKLKLSRREGTDLFLK--SgvRAIDSK---CK--IdtAPGQHGA--RKPRLSDYGSQLREKQKVRRIYG-ILERQF 72  Haemophilus inf...
1VS5_D        73 RNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 Escherichia coli
P56011        75 RSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQLVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSN 154 Helicobacter py...
O06325        68 RRYYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGVHVNVPSYRVSQYDIVDVRDKSLNT 147 Mycobacterium t...
P48939        67 VRYVKKARRATGSTGQALLELLEMRLDNTVFRLGMAGTIPGARQLVCHGHITVNGQVVDIPSYQCRPGDIVSVRDRDRSR 146 Synechocystis s...
P51219        67 FKYVKAAKKLQGSTGQILLQLLEMRLDNTIFRLGMAPTIPAARQLVNHGHICINGKVVSICSYQCKPGELITVKPQESSK 146 Porphyra purpurea
O51560        72 TNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILRANDQIQIKEKDSLK 151 Borrelia burgdo...
P46775        72 RRLFRLVLKQRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHGHVLLNDRTVDTPSIILNPGDKVRLKAKTIKI 151 Mycoplasma pneu...
P47553        72 RRLFRFVLKQKGNLTVNLFRVLESRLDNIVYRMGFAPTRKSARQMVNHGHVILNDQTVDTPSIIINPGDKVRLKARITKS 151 Mycoplasma geni...
Q9ZDI3        71 RNIFALAQRMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGKKADIASIRLKEGDIIEIKESIQQI 150 Rickettsia prow...
WP_005693170  73 RNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFATTRAEARQLVSHKAIVVNGRVVNIPSFQVSVNDVVAIREKSKKQ 152 Haemophilus inf...
1VS5_D       153 SRVKAALELAE-QREKPTWLEVDAGKMEGTFKRKPE--RSDLSADINEHLIVELYSK 206 Escherichia coli
P56011       155 SQVVRAMELTA-QTGIVPWIDVEKDKKYGIFTRYPE--REEVVVPIEERLIVELYSK 208 Helicobacter pylori 26695
O06325       148 VPFQIARETAG-ERPIPSWLQVVGERQRVLIHQLPE--RAQIDVPLTEQLIVEYYSK 201 Mycobacterium tuberculosis
P48939       147 KLVETNMEFPG-LANVPSHLEFDKNTFTGKVNSVID--REWVALQINELLVIEYYSR 200 Synechocystis sp. PCC 6803 substr. Kazusa
P51219       147 QLVESYLAFPG-LANIPSHLELNKSNLSGKINGVID--REWVALQLNELLVVEYYSR 200 Porphyra purpurea
O51560       152 KLIRSNIEKTSsLRNLPTWIEVNADDLNIKVKHAPS--RDEIPTLANEQMVVEYYSK 206 Borrelia burgdorferi B31
P46775       152 PIVKAASE----SGVVSPFVETNNKTFEGTYVRFPE--RSELPAGINESYVVEWYKR 202 Mycoplasma pneumoniae M129
P47553       152 PLVKNFIE----NSVISSFVETNKKAFEGTYIRFPE--RSELPAGINESYVVEWYKR 202 Mycoplasma genitalium G37
Q9ZDI3       151 PLIQESISKQG--QTTPGYLSFDIPSLTGKYLRVPAlsDVPYPFEAEVHLVIELYSR 205 Rickettsia prowazekii str. Madrid E
WP_005693170 153 ARIKASLELAE-QREKPTWLEVDSAKMEGVFKRVPE--RSDLSADINEHLIVELYSK 206 Haemophilus influenzae
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