Conserved Protein Domain Family
YceD

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pfam02620: YceD 
Large ribosomal RNA subunit accumulation protein YceD
This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.
Statistics
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PSSM-Id: 460623
Aligned: 79 rows
Threshold Bit Score: 47.3634
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6K976        159 LDGIVRTVITLGCYGCAEPAPQGIFANFSLL-LTE-DRVEEPDVVDlgtifeeeqtkapsltgsqedgddedidwDDRLH 236 Japanese rice
Q04FE2         58 VSLKIEGVAVLPSARSFYPVQYSFEIPMDEL-YVQ-DQETLDAFA------------------------------QTEQV 105 Oenococcus oen...
Q03GA0         56 IDAEISCDLTVPSSRSLKPVHMNLDFFISEI-YVD-NPSIIDSFA------------------------------KEEVV 103 Pediococcus pe...
Q3XYQ3         56 VHYTVQTTLTVPSTRSLEPVELPMDFSVDEV-FMT-EEQFQSRDEQm----------------------------SADEI 105 Enterococcus f...
Q1G9C0         58 GNFQVEADLLVPSSRSLEAVPLKQKFSFVEN-Y---SDHEPTQEEKe----------------------------LGLMI 105 Lactobacillus ...
Q38VU4         57 ADLHVVGQLTVPSTRSLNPVALPLDFTFTEI-YVDpTDEELSRFP------------------------------DEDML 105 Lactobacillus ...
jgi:Lreu_1230  57 ISAHVTTTLTVPSSRSLTPVQLPLDFTFSET-YID-DRSHFARYEDe----------------------------DEVVF 106
WP_000872145   55 fHLHITGSMVLPCSRSLVDVTLPFDIKTTEV-FQT-SQEEFe---------------------------------TEAEI 99  Bacillus
Q5WFF3         55 FSFTLKGELTLPCSRTLADVVWPYELK-EEAhFVP-EGEVPPPEL------------------------------EVEDT 102 Bacillus claus...
Q8Y5L1         56 aNLTMRGEWTLPCARTLEDVIYPYEVHATET-FVK-SKEQV----------------------------------LDESW 99  Listeria monoc...
Q6K976        237 FPAGEKEIDISKHIRDIIHLEITLDALCS--P-TCKG--LCLGCGENLNTSSC------SCNAE-KQQAKnvqrRGPLKD 304 Japanese rice
Q04FE2        106 FLIERNQLDLDAAILENIVTELPIAVYTD--E-ELKEkpISGKGWKLIDEEDYvepesgDHKET-TQN---------LGD 172 Oenococcus oen...
Q03GA0        104 MLVEDDVISVDKLIEDNIVLQVPMQVLTP--EeEKEGvmPSGAEWQVISEMDVe-----SEHEK-QVDPR-------LAK 168 Pediococcus pe...
Q3XYQ3        106 LLIEGPLLNLAESIEDNILLAIPMRVLTK--EeEAATelPKGNDWEVVSEEEYqrr-kmEEAEN-KIDPR-------LAK 174 Enterococcus f...
Q1G9C0        106 IPLDDDRIDVQTAVEDNMLLNIPSTVLTKe--eAEEDlyPEGQGWKVMSEQDFa-----GQKKD-QVNPA----FAQLRG 173 Lactobacillus ...
Q38VU4        106 FPLEGEMLDMQVAVEDHILLHIPSHILTP--EeENEDvmPTGQAWSVISEEEYakq-qaEEAEA----PN-----PELAK 173 Lactobacillus ...
jgi:Lreu_1230 107 LIKKGDSIDFDTALAENIVEQVPLRVLSA--EeKSGKpmPNGKGWSVISEDDYk----aQQQKDdKVDPR----LAKLQN 176
WP_000872145  100 HCLEGEVLDLLPVIKENILLEIPMQIFSD--D-VSGGapTQGQDWQVISEED---------KEK-PVDPR----LAGLAK 162 Bacillus
Q5WFF3        103 YTYTGEKIDLLPVMKERIFVNIPIQVFADnpS-DVQAp-PSGNGWELVTDKE---------KKE-RIDPR-------LAD 163 Bacillus claus...
Q8Y5L1        100 HVMEQDMVDLTPVVEELLLVEIPMQVFSE--D-ALEMsnLPRGKEWEMKTEEGnll-eqIAKEP-KVDPR----LAGLAn 170 Listeria monoc...
Q6K976        305 LL 306 Japanese rice
Q04FE2        173 FF 174 Oenococcus oeni PSU-1
Q03GA0        169 LK 170 Pediococcus pentosaceus ATCC 25745
Q3XYQ3        175 LS 176 Enterococcus faecium DO
Q1G9C0        174 LL 175 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002
Q38VU4        174 LK 175 Lactobacillus sakei subsp. sakei 23K
jgi:Lreu_1230 177 LF 178
WP_000872145  163 Ff 164 Bacillus
Q5WFF3        164 LA 165 Bacillus clausii KSM-K16
Q8Y5L1        171 ff 172 Listeria monocytogenes
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