Conserved Protein Domain Family
glyco_rpt_poly

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TIGR04370: glyco_rpt_poly 
oligosaccharide repeat unit polymerase
Members of this subfamily of highly hydrophobic proteins, with few highly conserved residues, all may act to polymerize the oligosaccharide repeat units of surface polysaccharides, including O-antigen in Gram-negative bacteria such as Leptospira (assign gene symbol wzy) and capsular polysaccharide in Gram-positive bacteria such as Streptococcus. O-antigen biosynthesis enzymes produce a repeat unit, usually an oligosaccharide, which itself is polymerized. O-antigen polymerase, usually designated Wzy. This family bears homology to the O-antigen ligase WaaL, but known examples of WaaL fall outside the bounds defined here. This model is much broader than pfam14296. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Statistics
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PSSM-Id: 275163
Aligned: 118 rows
Threshold Bit Score: 39.4495
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_03287991   59 VFENTKDRVIFLILHITIFTFLISRPFIGMLrgEKWWLESGQAPENIYFSINVILLSMLFIYIGAVigEHIYQKVERNND 138 Clostridium nex...
ZP_07061862   13 SYILWKKRCKVVLFISLLWSFSALMGIYYYSsdSYRGGLYDITLGPFVFLFVGFVILLIPLIKQKKeiHHVIYKKRIYID 92  Prevotella brya...
ZP_07032372   69 TFGPAPRTLRSLLRLPGLFWVLFFLG------------FSGCSLIWSVADSLPAAAAFWGGMASDWa------------- 123 Granulicella ma...
ZP_05648575   16 EIFITKNFLSPIVLFSSLFLLIITLAFFNLDg---MYQVTMKSFYIVFIGVLSFSFGSYFYRLIYVtsKQEKTSKNFLLK 92  Enterococcus ga...
ZP_07933549   21 FHLFIKRRIKSLSFFILLWIAILTSTSIAFYlfYYPILNSLSPEALLFSFVGMCILTTPLFIIDETkiKR-------IDF 93  Bacteroides egg...
ZP_08320479   19 SCYRKDKACLRYIMFIWMLSSIFSIIFYTASqeYNKITIIPYIFFATCLAISIIPFGYIDDRYSTItiR----------- 87  Paraprevotella ...
WP_013443932  24 YYLIKIKRLNELLYIFIIWFLFSIFSVLYNSsnAAYSSYKSTITLAPIIYIYV-----CFLITVSPlfKINSNNIQYIKS 98  Paludibacter pr...
WP_012056193  19 iqnidrpskRILYLYSLYWFISLFLSTLGLYdyKVPK---FETLFCLCISCWALIGGFLLIKCPVKsvDLKQSGIQLSIR 95  Parabacteroides...
WP_011965584  21 VWIKTKGWQLNGTLYILFFLLFSGIISAFYWnvSNGTIRNYSNLTLIPFFYLIIGYLITLMPIVKYdiTPRKELSITNKQ 100 Bacteroides vul...
WP_011669963  16 SYLFLKKTSWILLLIQAYWFFWMFLSSFSLTg---LFIPSDYTYSLYIMLLSSVTAGAGVAKFWDIktQNKTRLMPHSFF 92  Leptospira borg...
ZP_03287991  139 NNQEknqkKIQFRNNLQVVSMLAFYITMCFFLVQEGEK-LlYMQGRSYVEYYAGFHSQLPG------IFYTIASFMKYSL 211 Clostridium nex...
ZP_07061862   93 IIS------WIIVLICIEPFCELLYLFYDLITSGRIMLlGaSYDDVSNDNAEALVQLSVLGks---lAVYSRNFKIITPV 163 Prevotella brya...
ZP_07032372  124 ----------MVILLLRSGSISEVSSSLMKGIVYGACCvAlVAWILPAQSDLRLGDEDFLG-------PNAIGYACGFAM 186 Granulicella ma...
ZP_05648575   93 RKEFn-----FKFLYLLAFFVSLGNIISAFYAFMFIKNgGsYFAIRQMILGYNDADPLIKNpl---fNILSSYISGPGLF 164 Enterococcus ga...
ZP_07933549   94 SGCLg----FINKFCIVLGILSIPPLTENLLHFNTQSNmDfLVDTHALTDSGEVTNLSFLSsk---mINFCSHFADILGL 166 Bacteroides egg...
ZP_08320479   88 NKFFferiILFFCLISIIPFFENAIHLVKTFSFDNSDAlAtLYADKMEGDFNKQKVVNWYSpvgkicNSLNLKFQYCSLF 167 Paraprevotella ...
WP_013443932  99 PSNL----FLYIIYFISIIAYLPFIENIFHLLTSGFSNfGsIYESRDNLDFDPRAHMSFLGar---fNSILIWMQFVTPS 171 Paludibacter pr...
WP_012056193  96 GFFK----NKLFVGVLVVLTCYSLYLLYKFYTFMALGDlYqIRNLYFESGDLNIYGALFPN--------MNYWILKPFSF 163 Parabacteroides...
WP_011965584 101 GVFL----HYFTLFL--IIISFEPFGENLLHLPSVIANsDyAAKMYDSRVEYLSFIGRKLN-------RISTSFELIYPP 167 Bacteroides vul...
WP_011669963  93 GLLIkdkeKYYFYFILIFIFPIVLFFLSKSIYINLKPDaMyPSAFRTSAYGVYGESILFGKnk---yLYYYSLVVTPIIF 169 Leptospira borg...
ZP_03287991  212 CVFLATFPSKKr---aFTPLFLFELSAIPELLIGVRNPIMLNSIFIFLYYIMRDIYEKrqkwI---GKIEKVILV-ISIP 284 Clostridium nex...
ZP_07061862  164 LFFYYLQQEKTnafllIGLLCVSISPSLNNLTIGNRTELIWFLLYFSTLYLLLKNTIHp-------SKTKYFKVI-LITI 235 Prevotella brya...
ZP_07032372  187 FFAEYLILVRRekgpwKFSLVFLGITLLRSLSKTTIIAFIASGITLLLLDKSISRKT----------KVIVVLSLiVIFI 256 Granulicella ma...
ZP_05648575  165 ALIPFAMLFLLkkehiKFSGIVFMNLFFSAIYSGGRIILIYTLVQLLILFKWNNIKLS--------RKMRRSIIA-ISLI 235 Enterococcus ga...
ZP_07933549  167 LLCTLLINKKRnkwavIGIIICILSQLINVFLKGGRLSVVYQLYAFFIAYMLFYPVFNkk-nV---SKINKIGAV-IVSI 241 Bacteroides egg...
ZP_08320479  168 LLFLYLGYGKInkyklGGLLMGCVNPVLYTLSLSGRSAVVFTSLNAIFTYLMFRNYIKn---R---NYIKRIKAI-AIGI 240 Paraprevotella ...
WP_013443932 172 FLFIYLSKFKVniiiaIGLIFAAFNSSILGLCSGSRGIATATILNVAYCYLLFKNFLP----IfinKIIRLSLLF-IGTL 246 Paludibacter pr...
WP_012056193 164 LCAGLFGFGVLyyrskLLLLIFVMLFSLSSLGGGRIDYFRYLVIPLLLFGYCFYPKRF----K---ITLKKGLLI-LVMS 235 Parabacteroides...
WP_011965584 168 LLFYFLQKKIIskkivYGLIMVILSFWIHELGLGGRSKLVQNILYLVVCFFLMRPYINacitK---KIILYGSVV-IGLG 243 Bacteroides vul...
WP_011669963 170 ASLFLGATFYLrlkkmRVLILGAILTIMETLMFLGRFGFYYVLIVLILVLVIKVFRNHk---S---FLNSISLIHiFIAT 243 Leptospira borg...
ZP_03287991  285 TSlIFMTVYAYV-------RSGVAiAQKNIFklFFDFFYGQGVTFNVLSIA-----YGYR-NNlpERPWRNYTFGGMIDY 351 Clostridium nex...
ZP_07061862  236 FSvFLTFFIAIT-------LGRYLiGYGEDSasSFLIQYTAESMYNFNTNA-----FHEP-----TPLYGHQAFNYFIDK 298 Prevotella brya...
ZP_07032372  257 LFsSLLVSYFSD-------YTDTDtGDQAESlsGRLGIWAYILNEAVDKPLi---------------gHGFHSVWHVIPP 314 Granulicella ma...
ZP_05648575  236 AIvIIIIISDNR-------SSNSLlKSFYRYfsGPMALLSYWTNYADVQNIn----SYGL-SFfyPFSYMINAFFNFLGM 303 Enterococcus ga...
ZP_07933549  242 CIlLLIVSTQTR-------FGDKDvTYINAKenQAMLAALSTYTGEAPIRF-----SSFG-WKlkGHSEGHSLYHYVVSF 308 Bacteroides egg...
ZP_08320479  241 FSiFILLFSIMT-------FARYSmSEGAQTvsLLGWISLYAGEGTLNFNQ-----NMWH-TQafTEGDNCFAFIKYILG 307 Paraprevotella ...
WP_013443932 247 FVlGLFWATLSR-------FGDHGiYNSDNTilDWIYRYLGEGLVNF---------YKDG-WSttSFTNGQNSFYQLFG- 308 Paludibacter pr...
WP_012056193 236 AAmFFLLTIIGAgrrgymeFDKESlDVGVEMttENLMSYSYGPIVAFDYAL-----NNNYlDKlgGYSYGTLTFNAFNGL 310 Parabacteroides...
WP_011965584 244 ICmVLLISISRF-------TSIEAeGSNIENiwIWLGLYAGEGVLNFNSLM-----WYv-----eKSTGGDSTFIFLKDL 306 Bacteroides vul...
WP_011669963 244 CIlLGVFFISAI-------RNSNWqFDFREFlnIYIIDYHTESFSIFDSELkdaksLLHE-RTygRASLGTLESSFSVAL 315 Leptospira borg...
ZP_03287991  352 I-------------VHGRigqmlfgtdplpegnnwtngtlSNNFSHNFSYLVRKDDYlNGQGWGSSYILETYVDFGYIGL 418 Clostridium nex...
ZP_07061862  299 A-------------NG-------------------------TASTLGDFRDYLNVHMrSPSWIFYSIIGDFYIDFGLIGA 340 Prevotella brya...
ZP_07032372  315 F-------------YSSH----------------------------------------FEARHAHNELLQQFYAYGAVGV 341 Granulicella ma...
ZP_05648575  304 P-------------NNFLh--------------------dIVLWQGMPQNVWVQVFPdQSMNAFSTLFYFFYQDFREFGV 350 Enterococcus ga...
ZP_07933549  309 F-------------NGTD-----------------------FKLGTENREWIQKHTGlKYPQCFYGLPGYSYIDFGIGGG 352 Bacteroides egg...
ZP_08320479  308 M-------------DT--------------------------FTDFLERRDYWGPKMgISPSRFYTFVGDMYSDFGYFII 348 Paraprevotella ...
WP_013443932 309 ---------------------------------------------DKRNIMLLEKIThIRMYVFYTSFGDLLIDFGPFAT 343 Paludibacter pr...
WP_012056193 311 LdiafrmigisygtNFSD----------------------FVILKQDTWITLSRQNFdKNWNALFSWNFYFYLDFGIVGM 368 Parabacteroides...
WP_011965584 307 L-------------GLTK----------------------GSGVEDNWATV---SKLgIPGNIFYTYIGSIFEDFNKIGT 348 Bacteroides vul...
WP_011669963 316 A-------------FFRIplhiqv-----------qsdliGGYLNKNRIIGYSKDGRpKEYNAFGSVLFTLYKDGGIPFI 371 Leptospira borg...
ZP_03287991  419 ILFNLILGILLVYMLK---RL-G---R--N-TLLDTIFLLSLTTIFLIPRAEATGWLSFIVTAQFWACI 477 Clostridium nexile DSM 1787
ZP_07061862  341 LLFIVVVSLIYRNTLSg---T-S---I--NlEVLLLFSIYLYAVANGLFYCCYMMSWAPAIYCFLFYLL 400 Prevotella bryantii B14
ZP_07032372  342 VMLIgLYGSFYRQIKKl--------pA--SpLKAMLFGLLVFILIRGLADTEAFDLSLPLWAITLFSTL 400 Granulicella mallensis MP5...
ZP_05648575  351 FIFSLIFGFISEFVFNk--AF-H---Q--RnEKYLLIYLLGVKALVGSFIIWQLGSTSFFLSLVLMIVC 411 Enterococcus gallinarum EG2
ZP_07933549  353 ILNICIISFCILKICK------R---S--GiIKFYDLIFMIVCFKILMMSTLFFPYCNSKIfdlgylfa 410 Bacteroides eggerthii 1_2_...
ZP_08320479  349 PFLLTLSFILKKAIFKkhiIA-S---N--KlYILYVWGMLCVTGFTCFTYKTFSNSLDLFTGFLIIWLi 411 Paraprevotella xylaniphila...
WP_013443932 344 LLILLSIAFLIRRISI---RKgC---I--NpFDLVYINLYSYSIFMGLFTFSYINSTYILIFSIIITYI 404 Paludibacter propionicigenes
WP_012056193 369 IVFPFLFGILMRKSIC---WF-Y---RyqNvSSMILLNIFFLSLILSVIDFNLSSMSMGVLMIFLYIkm 430 Parabacteroides distasonis
WP_011965584 349 LIFLLVFSTITIKLTK---IK-NgliT--FpQIIILCLCARVLVIPTFYTYTSLMAQTNLLCVLCFSMV 411 Bacteroides vulgatus
WP_011669963 372 IGMGILFGFCVAKFSKs--FI-S---L--NpYYISLLGSLFFVGIFGIFKPVMAEQITQTIFILWFIWL 432 Leptospira borgpetersenii
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