3NR6


Conserved Protein Domain Family
RVP

?
pfam00077: RVP (this model, PSSM-Id:395030 is obsolete and has been replaced by 425454)
Retroviral aspartyl protease
Single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases such as pepsins, cathepsins, and renins (pfam00026).
Statistics
?
PSSM-Id: 395030
Aligned: 9 rows
Threshold Bit Score: 102.046
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3NR6_A   21 PEPRITLKVGGQ----------PVTFLVDTGAQHSVLTQNPGPLS-----DKSAWVQGATGGK-RYRWTTDRKVHLATGK 84  
A1Z651  546 PEPRITLKVGGQ----------PVTFLVDTGAQHSVLTQNPGPLS-----DKSAWVQGATGGK-RYRWTTDRKVHLATGK 609  Xenotropic MuLV-rel...
P04585  495 QRPLVTIKIGGQ----------LKEALLDTGADDTVLEEMSLPGR-----WKPKMIGGIGGFI-KVRQYDQILIEICGHK 558  HIV-1 M:B_HXB2R
Q9IZT2  753 SRPMLHISLNGR----------RFLGLLDTGADKTCIAGRDWPANwp-ihQTESSLQGLGMAC-GVARSSQ-PLRWQHED 819  Mouse mammary tumor...
P63120    8 NRPVCKAIIQGK----------QFEGLVDTGADVSIIALNQWPKNwp-kqKAVTGLVGIGTAS-EVYQSTEILHCLGPDN 75   human
Q9TTD4  144 ARPELELRINGK----------LFRGVLDTGADISVISDKYWPTTwp-kqMAISTLQGIGQTT-NPEQSSSLLTWTDKDG 211  sheep
P03353  455 QQPILGVRISVMgqt-----pqPTQALLDTGADLTVIPQTLVPGPv---kLHDTLILGASGQT-NTQFKLLQTPLHIFLP 525  Human T-lymphotropi...
P19199 1195 YNGLYNVKVGIKpdnm---epyYINAIVDTGATACLIQISAIPENyyedaKVTVNFRSVLGIGtSTQMIKAGRILIGEQY 1271 Commelina yellow mo...
P0C776  586 DRPLVRVILTNTgshpvkqrsvYITALLDSGADITIISEEDWPTDwpvmeAANPQIHGIGGGIpMRKSRDMIEVGVINRD 665  Rous sarcoma virus ...
3NR6_A   85 VTH--SFLHVPD-CPYP------LLGRDLLTKLKAQIH 113 
A1Z651  610 VTH--SFLHVPD-CPYP------LLGRDLLTKLKAQIH 638  Xenotropic MuLV-related virus VP62
P04585  559 AIG--TVLVGP--TPVN------IIGRNLLTQIGCTLN 586  HIV-1 M:B_HXB2R
Q9IZT2  820 KSGiiHPFVIPT-LPFT------LWGRDIMKEIKVRLm 850  Mouse mammary tumor virus (STRAIN C3H)
P63120   76 QEStvQPMITS--IPLN------LWGRDLLQQWGAEIT 105  human
Q9TTD4  212 HTGqfKPYILPY-LPVN------LWGRDILSKMGVYLy 242  sheep
P03353  526 FRR--SPVILSS-CLLDthnkwtIIGRDALQQCQGLLY 560  Human T-lymphotropic virus 2
P19199 1272 FRMpvTYVMNMGlSPGIq----mIIGCSFIRSLEGGLR 1305 Commelina yellow mottle virus
P0C776  666 GSLerPLLLFPAvAMVRg----sILGRDCLQGLGLRLT 699  Rous sarcoma virus (strain Schmidt-Ruppin A)
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap