Conserved Protein Domain Family
holA

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PRK05574: holA (this model, PSSM-Id:235511 is obsolete)
DNA polymerase III subunit delta; Reviewed
Statistics
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PSSM-Id: 235511
Aligned: 380 rows
Threshold Bit Score: 257.427
Created: 9-Dec-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
78065218    1 MQLRLDALEPHLAKG-LAGLYTVYGDEPLLAQEACDRIRA-----AARAAGFTERSVHTVERG-FD-WSVLLGATQAMSL 72 
15894555    1 -MINYTELEENIKKNnIENVYIMCGFNEKLMKESINKILK-----KSISQDFESLNYSVFDGNeVE-FEDILNACETVPF 73 
28211662    4 LRAYREEIKKNN----IKNCYIFYGSDEDMIKENISLIKNklikdKLINEDFIDLNFAKFDGNtLEnFDEVINACETLPF 79 
18311025    1 -MIDLDGLYENLKKGkIEKSYILVGLDELLIKEGIENIID-----NVLDEGFKDLNLIRLDGNnLN-FDDFMNACETLPF 73 
150015706   4 YEVYEQEIEKGN----IKNGYIFCGLDEEFIKDGISLIIK-----KNIAEEFMDLNLIRIDGMnTS-FDAIMNACETMPF 73 
187934397   1 -MINYEVFERDIEKGnIKNSYIFCGLDEELIKDSINSILN-----KTIGNDKDNLNLIRIDGMkTN-YDEIMNACETFPM 73 
302874291   4 FLVLEENIKNNK----IDNKYILFGFNESLIKENIRNISK-----KQLDPNFFDLNYVQFDGItSK-AEDIINSCETLPF 73 
110799726   1 -MIDLDGLYENLKKGkIEKSYILVGLDELLIKEGIENIIY-----NVLDEGFKDLNLIRLDGNnLN-FDDFMNACETLPF 73 
110802048   1 -MIDLDGLYENLKKGkIEKSYILVGLDELLIKEGIENIID-----NVLDEGFKDLNLIRLDGNnLN-FDDFMNACETLPF 73 
118443890   1 -MIDSFTLEDKLNKGnFSNVYIFCGSDEQSIKKAIDKIVD-----KVVNKDFKELNYVQLDGMtVD-NDSIINACETLPF 73 
78065218   73 FGERQLIELRIPSGKPGKE------GADALKTLAA-----TPNPDALMLVTLPRLDAATQKSAWFT---AL--QN-GGVA 135
15894555   74 MSEKRMVVVYRAGFLNDNSsgsnknSDKLIKDIEKyvpnvPKHCILVMYYVFD--NTREKPSYRVK---KF--DK-KVCV 145
28211662   80 MSSKKIVLIYRANFLGKNKk-----SEGVYSAFKKyleniPENTVLVLYYIFKEKRERVEN--------KVlkLNkKCDI 146
18311025   74 MSDKKVVVLNRTNIFRDKQ------DKETEKLYKQcieyfQNTPEHCVLIAYTTLKDKRDRVNRLSklkKL--EK-SSCI 144
150015706  74 MGEKKVVVVYRSNFLQDKTds---sGTKIYNDIKSyisnlPPYTVLIMYYLLNDKRDRPNKNKKLA---TI--GK-SLTI 144
187934397  74 MSDKKVVIVYRANFLKDKS------DEASNKIYKSilkyaSDMPPYTILIMYHLFNDKREKPNKNKklnSL--DK-LITV 144
302874291  74 MDSKRIVVVYRAVFLEDDGkqqgvsAEDTFKKISAyidkvPEHCILILYYVFDEKRDKASK--KIK---AL--EK-KCTV 145
110799726  74 MSDRKVVVLNRTNIFRDKQ------DKETEKLYKQcveyfQNTPEHCVLIAYTTLKDKRDRVNRLSklkKL--EK-SSCI 144
110802048  74 MSDKKVVVLNRTNIFRDKQ------DKETEKLYKQcveyfQNTPEHCVLIAYTTLKDKRDRVNRLSklkKL--EK-SSCI 144
118443890  74 MSEKRVTLIYRANFLKDKVdk---sMDKVFKNLTKyiediPK--DSILIMYYIFENDREKESLKLK---KL--DK-KAEV 142
78065218  136 LKIDPVDRAQLPNWIGQRLALQGQRAAPGddgrrALQFIAERVEGNLLAAHQEIQKLGLLYPQGA-LSFEQVHDAVLNVA 214
15894555  146 VEFSKLRGMQFQKKVKDVFAEKGKQIGKT-----ELNYFCSRVENNMDIVYNEIEKLCCYTLEKE-ITKESIDNLLQPNE 219
28211662  147 IEIKDLKGRDLEKKVKDLFEEKGKKIALV-----ELKLFCSNLPNNMGIIEKEVEKLCCYTLERD-ITKQDIYDMFPAKQ 220
18311025  145 VSVEKLKGAKLQQKVGRIFQRYNKNIGKI-----ELKYFCDSVENNFDVIEREVDKIVNYVGERE-ITRKDIDLLLPPRY 218
150015706 145 VYCDKLKRDKYLKKVSEVFKEKGKQIGRT-----ELSYFCEKVYNNFDIIKREADKLISYCGERE-IKKEDIDILISKSS 218
187934397 145 VHCDKLRRDSYIKKINDLFKINKKNIGRI-----ELIYFAEKVQSNFDIIKREIDKLISYT-DGKeITKRDIDMLISSSG 218
302874291 146 VEFKQLKSATLQKKVKVLFEERNQPIEKA-----ELSLFCSGLDNNMDIIINEVEKLCCYAL-GRtITKEDIFLLAPPKS 219
110799726 145 VSVEKLKGAKLQQKVGRIFQRYNKNIGKI-----ELKYFCDSVENNFDVIEREVDKIVNYVGERE-ITRKDIDLLLPPRY 218
110802048 145 VSVEKLKGAKLQQKVGRIFQRYNKNIGKI-----ELKYFCDSVENNFDVIEREIDKIVNYVGERE-ITRKDIDLLLPPRY 218
118443890 143 VKFSKLKGMALQRKVGEVFKRKNKAISKS-----DLALFCNIVENNMDIIENEVEKLCCYVDDRD-IVTEDITKLISGKN 216
78065218  215 RYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAVVEELRTLLRIKRGTTAGKPLATLLREN------RVWGPRE 288
15894555  220 TDDIFNLVDYISQSKPEMAITVLNEIMYKGVKANSILYMVERQFKLMLSIKIGIENKQSKEALVKEL------KLNPYVC 293
28211662  221 EDDIFVLVDKMGDKRVKEAIDRFNELLHIGESIFNILYMIERQFNLIYQVSRYVKEGKTIEEISRII------RLPNFIC 294
18311025  219 EDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIFILSQIREQFQKLHRVKIRLSEKYRIDEIKKDFlefsrvNLPDFVI 298
150015706 219 EDDTFDLVELIATKKIDKAIDTMKEILYKSDQHMLIISAIQKHFLRLYEIKIKLSNGKKVDDFMSDY------RLPQFVC 292
187934397 219 EDDVFDLVELIAQRKIERAMDVMKEILYKSDQHMLIISNIQRHFIKLYDIKTGLRQGKKISNFMTEL------RLPQFVC 292
302874291 220 DSDIFNLVDYVSQKNTKVALDILNELIFRGEKFPVILSMIERQFKIILSLKLGSKKGKNLEVLSKEL------HLNPYIA 293
110799726 219 EDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIFILSQIREQFQKLHRVKIRLSEKYRIDEIKKDFleasrvNLPDFVI 298
110802048 219 EDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIFILSQIREQFQKLHRVKIRLSEKYRIDEIKKDFleasrvNLPDFVI 298
118443890 217 DNDIFNLVDFVSQRKPQKSLDILNELVFKGESVTGILRMIQRQFKLIFDIKINMDKGKNKDDIAREL------RLHPFIC 290
78065218  289 RLIGPALNRVSEAVLERALAFAAKLDRQVKGLTavapgrrtqdepPPDPWDGLFQLAMTVAGAR 352
15894555  294 DKMINECKRFTMKKILKSLDICLRTEKELKSVS-------------GDPKFKMEVLIINLAII- 343
28211662  295 TKLVGQSKKFTETQIKNAMERCLETEKVLKSTS-------------TNKKVEMEMLIIQTIAM- 344
18311025  299 EKFINQSKKFSNKQLNKCINLCLYTEKKLKSNS------------NLNKKTELELMIVSTVI-- 348
150015706 293 EKLIMQTNKFTEKQLSELIKLCVNTETKLKSTG-------------IDKNMEMEFLLINTLTVK 343
187934397 293 EKLVAQSSKFTEKQLSELVKLCVNTENNLKSSG-------------LDKTMEMELLLINTLTVK 343
302874291 294 EKMMAQSKKFTEEKLMKILGHCLESERILKSSS-------------VDVKIELERLLIKIALA- 343
110799726 299 EKFINQSKKFSNKQLNKCINLCLYTEKKLKSNS------------NLNKKTELELMIVSTVI-- 348
110802048 299 EKFINQSKKFSNKQLNKCINLCLYTEKKLKSNS------------NLNKKTELELMIVSTVI-- 348
118443890 291 EKMMNQSKKFSVGQLEKIFKLCMDTEKTLKSSS-------------VNQKTELELLIINTVIV- 340
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