Conserved Protein Domain Family
Med28

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pfam11594: Med28 (this model, PSSM-Id:402955 is obsolete and has been replaced by 431950)
Mediator complex subunit 28
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumors.
Statistics
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PSSM-Id: 402955
Aligned: 51 rows
Threshold Bit Score: 39.5396
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ELT98251        7 TIVD---------DLEGAF----HGCLACMTSQEHFNI---------SDS-DEVK----TSVDQSIQKFLDVAKQMECYF 59  Capitella teleta
XP_003294505   11 NIIDingptilfkNLNESL----EKLIESLIKNDRENQif-----------------ieDTLDRKIDTLLNNSKKLESYF 69  Dictyostelium ...
KYR02297       32 ILLQ---------NLNMNL----QEFLQMLIA---------------SNSnDSNQldidNRLNSQIDNFIGSAKDMELYF 83  Tieghemosteliu...
EXX68244       11 TLLE---------QLSLEL----HECLGKIIPDINEEAlnqtkkaeyPDKyEEVErikeKLVENQTHKFLSVAKQLEIEF 77  Rhizophagus ir...
ORX55600        7 ELVD---------KLSSTF----DKCLGNALSD--------------TSKeEKDK----LDVTILKQCFIDLQYQL---- 51  Hesseltinella ...
EPB88027        5 GITD---------ELSKSF----DACLETILADPQQKE--------------EDA----ESLDTQLAALKSSFLKIENQL 53  Mucor circinel...
10_pfamImport   1 NMLSssegskawtEFQSTL----KSCLSPFRMPAEVSS---------VNA-EEVK------TKVAAHNFIEASRKLENYF 60 
KRZ77324       10 DVIN---------NFRQAV----KACLTLLSVPVKTRH---------IEA-DEIK----TTAEVATHRLIEAARRSERHF 62  Trichinella pa...
ORX41960       16 QLLN---------NITDSL----NNLIKLI-----------------PENlEEKR----IDGDNSSSNYINTINDSLNLL 61  Piromyces finnis
GAV04090       32 SFVK---------HLEEATerilRSCIGDVNGPGRFSP---------SEAgDGLR----FHADEDAKEFVEAHTRFEQFL 89  Ramazzottius v...
ELT98251       60 ---LQQRTLLSIYKPEQI-IKEDIQELRQEIAVKDALIERHHEKL-----------TQWQSII 107 Capitella teleta
XP_003294505   70 ---VSLQNKYSEEKNKIQ-LKQELIKVKREIENKDRLIEKYKYKV-----------KEWKSHF 117 Dictyostelium purpureum
KYR02297       84 ---KEIQSKHKNEKSITE-IKQEITKIKVEIENKDKLIEKYSKKV-----------KEWKSHF 131 Tieghemostelium lacteum
EXX68244       78 -----NKIVFSERQTEEViLKEEIDGLRQTIGQQKEVITKYTLLM-----------KQWTKEF 124 Rhizophagus irregularis DAOM 19...
ORX55600       52 -----KSISLASIQQKPLsVKESIAALEKDIAIKQQTIEKYNGKI-----------EHWLTVL 98  Hesseltinella vesiculosa
EPB88027       54 ---RDIRLK-ALSSKELS-VTESNKLLRRDIDIKKSTIDKYVTKI-----------ENWEKEL 100 Mucor circinelloides f. circine...
10_pfamImport  61 ---TRKYQLFCAYCPEAA-LKEEINEMTLEIERKKTMVQTKVSLVpfhlcmknhiyACWNFFV 119
KRZ77324       63 ---NRLYALFSAYCPEEV-LKEEMNDMKQEIERKKNMILKHEEKM-----------IAWEQIL 110 Trichinella papuae
ORX41960       62 kanVTTTLVKTYENPELT-IQKEIKELEKEKDVKDYVIQRTYNNL-----------RIWNSIL 112 Piromyces finnis
GAV04090       90 ---NQAKLTYSQQHPEKV-LAARMRDMRRAMERKDKLIRSHHDNI-----------TKWSDVL 137 Ramazzottius varieornatus
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