4N9F


Conserved Protein Domain Family
CBF_beta

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pfam02312: CBF_beta 
Core binding factor beta subunit
Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold.
Statistics
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PSSM-Id: 396750
Aligned: 19 rows
Threshold Bit Score: 180.631
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4N9F_0         1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQT 80  human
Q2F7Z1         1 MPRVVPDQRSKFENDELFRKLGRDSELRYTGYRDRAQEERQMRFVNSCREGHAQLSFVATGTNLHLQFYPNSWSETTDRK 80  purple sea urchin
Q4H3S2         5 MPRVVSDQRATYDSNELFRRLSRDTEIKYTGYRDRGTEERQLRFQNSCRAGRAEIAFVGSGTNFTLQFYPWSVEGGQGIT 84  vase tunicate
1_pfamImport   1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQT 80 
XP_003221638   1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQT 80  green anole
ACF96954       1 MPRVVPEQKQKFENDEMFRKLARESEIKYTGYRDRSHEERVVRFQTEIRDGQSNVAYVASGTNLTLHF-PKAEDGFIRS- 78  starlet sea ane...
XP_002602848   1 MPRVVPDQKAKFENDEFFRKLGRECEIKYTGFRDRSHEERVVRFQADLREGHAEIAFVATGTNLALQFSPSA-----DKA 75  Florida lancelet
EFO96078       1 MKRTTNDQQTSFQSDYFLTQLAHFTEAKFSLFEHAPLVERRERFRNHIERDEMPLTFCKMGINIPVKLETSQTI------ 74  Caenorhabditis ...
CAP20507       1 MKRTTNDQQGSFQTDYFLTQLSNFTEAKFSLFEHAPANERRDRFRNHIERDEMPLTFCKMGINIPVKLEWCQTI------ 74  Caenorhabditis ...
Q24039        37 MPRVVPDQRSKFDSDELFRRLSRESEVRYTGYRERAMEERRMRFVNDCRKGYAEISMVASGTNLQLYFNAN---HNPYAQ 113 fruit fly
4N9F_0        81 PsREYVDLEREAGKV----------------YLKAPMILNGVCVIWKGWIDLQRLDGMGCLE-FDEERAQQEDALAQQAF 143 human
Q2F7Z1        81 PtKEYVDFDKEIGKV----------------CLKSQFILNGVCVIWRGYIDLNRLDGVGHVE-FDSQRAKEEDEIYRATM 143 purple sea urchin
Q4H3S2        85 PpKDYVNFDREPGKV----------------HLKAPFILNGVCVCWKGWMDLHRLEGMGSIV-YDEERAQLEATRQGGSM 147 vase tunicate
1_pfamImport  81 PsREYVDLEREAGKVgnislrfkilwvlgkkYTRMDVTENARCLIGK-------------------QSSKQEDALAQQAF 141
XP_003221638  81 PtREYVDFEREGGKV----------------YLKAPMILNGVCVIWKGWIDLQRLDGMGCLE-FDEERAQQEDALAQQAF 143 green anole
ACF96954      79 ---EFLDFDREPGKV----------------HIKSHFILNGVCIIFKGWIDLQRLDGIGYIE-YDEEKARKEDKIMRETL 138 starlet sea ane...
XP_002602848  76 PsKEYVDFEKEPGKV----------------HLQARFILNGVCVRWKGWIDLQRLDGIGSIE-FDEEKAKIEEQQMKEAM 138 Florida lancelet
EFO96078      75 --GNEINFRSRP------------------------FVFNGIWVKVVGTMNTETLDGRVRFErFQRETR------VPRVI 122 Caenorhabditis ...
CAP20507      75 --GNEINFRSRP------------------------FLFNGIWVKVFGTMNSESLDGRVRFErFQREKS-----VHHRVL 123 Caenorhabditis ...
Q24039       114 --EQDCDFERERGKV----------------HLRSSFIMNGVCVRFRGWVDLDRLDGAACLE-FDEQRAQQEDAQLQEQI 174 fruit fly
4N9F_0       144 EEAR--RRTREFEDRDRSHREEMEVR 167 human
Q2F7Z1       144 EQQN--RRLREFEERTMLHRKEFEQQ 167 purple sea urchin
Q4H3S2       148 QQHM--HKTSNPKTQNHKHPATGGSS 171 vase tunicate
1_pfamImport 142 EEAR--RRTREFEDRDRSHREEMEAR 165
XP_003221638 144 EEAR--RRTREFEDRDRSHREEMEAR 167 green anole
ACF96954     139 EQAK--QRLAEFEERQRQWREEQQRK 162 starlet sea anemone
XP_002602848 139 EQAT--RRQREFEERQQAHRDQMERR 162 Florida lancelet
EFO96078     123 SQLTdiKRIPEVEEETIGLTEAEMAA 148 Caenorhabditis remanei
CAP20507     124 TETK--VKFPEVEEEPIGLTDAEIAA 147 Caenorhabditis briggsae
Q24039       175 QSYN--QRM---AESRRIYHTPQTPP 195 fruit fly
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