Conserved Protein Domain Family
Helicase_RecD

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pfam05127: Helicase_RecD (this model, PSSM-Id:377463 is obsolete and has been replaced by 461555)
Helicase
This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain. It is found in the bacterial exodeoxyribonuclease V alpha chain (RecD), which has 5'-3' helicase activity. It is structurally similar to the motor domain 1A in other SF1 helicases.
Statistics
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PSSM-Id: 377463
Aligned: 100 rows
Threshold Bit Score: 141.933
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q55HL6          280 ALTAGRGRGKSAALGLAIGAALAHDY------SNIFVTSPDPENLKTLFEFVFKALDAlgyeehidydvvqstnpdfkka 353  Cryptococcu...
EID63216        168 VISGGPGTGKTTTVAKLLAALIQMADge---rCRIRLAAPTGKAAARLTESLGKALRQlpltdeqkkr-------ipeda 237  Shigella fl...
WP_011998165    250 TVTADRGRGKSGAVGIGLIGFVETFKkskggfAKVIVTSADPIGVQTLFSLAMKAANVlgikakrvek-------kgyvy 322  Ignicoccus ...
imbp:Hbut_0953  286 IITSDRGRGKSGAVGIASIGLAARLRkel-grVRIVVTAPNLSNVQSFFTLALKAAEKlelkthivrr-------gdnil 357  Hyperthermu...
Q9Y993          250 VITADRGRGKSSALGIGLVALAHELGkvk-hrVRIIVTAPSPSNVQSLMELAIKTAETlglepkpvrr-------ggrii 321  Aeropyrum p...
jgi:Smar_1124   265 VITADRGRGKSCAVGIGSVGLIHVLRkvk-pkPRILVTAPSPSNVQSLMMLARKVLDAlgykyevikr-------egnvi 336  Staphylothe...
Q74MW6          249 VLTADRGRGKSVAVGLGIAGITYVFYkk---pFYIGITAPNRGNIESLWEFLKKALEKlelkyee------------kkn 313  Nanoarchaeu...
jgi:Cmaq_0634   243 VIIADRGRGKSAAVGLAVSLIGHRLRrrr-gvARIVVTAESPDNAETLMEFAKRGFEElgydvevsrt-------gsniv 314  Caldivirga ...
jgi:Pisl_1443   244 VIIADRGRGKSAALGLGLAGIGHKLRkak-srVQIVVSAMEYTNLETLLEFAIKGLEAlgykpgvere-------ggeir 315  Pyrobaculum...
A1RY08          250 VLTADRGRGKSSAVGLGVGWLAHRLRrak-gkCKVVVTAPAVTNVQEVFRFSAAVLDLfkhkvevled------esgmit 322  Thermofilum...
Q55HL6          354 ivrvNifr--ghRQTIQYISPEDSHVLG-QAELVIIDEAAAIPLPLVRKL---I-GPYLVFM-----------ASTING- 414  Cryptococcu...
EID63216        238 ctlhRllgaqpgSQRLRHHAGNPLHL-----DVLVVDEASMIDLPMMSRLidaLpDHARVIFlgdrdqlasveAGAVLGd 312  Shigella fl...
WP_011998165    323 elhgE-------GWSIEYWPPADAAVKSa--DLVVVDEAAGIPVPLLHKI---WkNHKRSLF-----------ATTIHG- 378  Ignicoccus ...
imbp:Hbut_0953  358 eihgK-------GFSIEYWEPIHVPRLKa--DIVIVDEAAGMHIPLLHKI---WrSHRKLVF-----------ATTIHG- 413  Hyperthermu...
Q9Y993          322 evqgR-------KFSLEYWEPATVVRLQg--DIVAVDEASGIHVPLLHKI---WrAHRRLVF-----------SATIHG- 377  Aeropyrum p...
jgi:Smar_1124   337 elrgE-------KFSIEYWEPINIPRIRg--DIVIVDEAAGIHVPMLHKI---WmSHNRLVF-----------STTIHG- 392  Staphylothe...
Q74MW6          314 kikaG-------KVIIEYKQPQDLVKRKy--DLVAVDEAAGVYVTYLYKI---MnKYDRLVF-----------STTIHG- 369  Nanoarchaeu...
jgi:Cmaq_0634   315 glstR-------GIYVDYYKPYPLMSLQrPIDLVVVDEAAMMPLPILYGI---HnRFTRVIY-----------STTIHG- 372  Caldivirga ...
jgi:Pisl_1443   316 aikaK-------GIFIDVVTPYMLLKREnA-DIVAVDEAAAVPLPVLYAV---HkKFDRLVF-----------ATTIHG- 372  Pyrobaculum...
A1RY08          323 kllsK-------GIEIEYVTPLDVLKAKg--DLLVVDEAASIPVPLLFKM---LkRFNKVVY-----------SSTIHG- 378  Thermofilum...
Q55HL6          415 ---YEGTGRSLSIKLIQQLREqtrpsitkdsenaaassagssskaaaagrsgagLVrSLREIKLDEPIRYSPGDNVEKW- 490  Cryptococcu...
EID63216        313 icaYANAG------FTAE---------------------------------------RARQLSRLTGTHVPAGTGTEAAs 347  Shigella fl...
WP_011998165    379 ---YEGAGRGFNVRFLPALKNd--------------------------------KKtELKMIHMTEPIRYAPGDPVERW- 422  Ignicoccus ...
imbp:Hbut_0953  414 ---YEGAGRGFSVRFLPALKNd--------------------------------PNtELIEVEMHEPIRYAEDDPIERW- 457  Hyperthermu...
Q9Y993          378 ---YEGAGRGFNVRFLSAVKKs--------------------------------GDtIIREFKMEEPIRYAPGDPIERW- 421  Aeropyrum p...
jgi:Smar_1124   393 ---YEGAGRGFSVRFLTKIRNd--------------------------------KNtQLIEYEMTEPIRYSINDPIEEW- 436  Staphylothe...
Q74MW6          370 ---YEGAGRTFNVRFLKALKEn--------------------------------PNlMVIEHKMKEPIRYAIDDPVERF- 413  Nanoarchaeu...
jgi:Cmaq_0634   373 ---YEGAGRGFSVRFLKYLRGr--------------------------------RGiRVLEYEMTEPIRYARDDPIERW- 416  Caldivirga ...
jgi:Pisl_1443   373 ---YEGAGRGFSIRFLKYLKEs--------------------------------KDtDVYLYEMEEPIRYGRGDPVEQW- 416  Pyrobaculum...
A1RY08          379 ---YEGAGRGFSLRFLKRLKNe--------------------------------EGvKLYEYEMSEPIRYAPEDPIEKW- 422  Thermofilum...
Q55HL6          491 LNNLLCLD 498  Cryptococcus neoformans var. neoformans B-3501A
EID63216        348 LRDSLCLL 355  Shigella flexneri 5a str. M90T
WP_011998165    423 LYDSLLLD 430  Ignicoccus hospitalis
imbp:Hbut_0953  458 LFDALLLD 465  Hyperthermus butylicus DSM 5456
Q9Y993          422 LYNTLLLN 429  Aeropyrum pernix
jgi:Smar_1124   437 QFKTLLLD 444  Staphylothermus marinus F1
Q74MW6          414 MYDVLLLD 421  Nanoarchaeum equitans
jgi:Cmaq_0634   417 LFKTFLLD 424  Caldivirga maquilingensis IC-167
jgi:Pisl_1443   417 LFDAFLLN 424  Pyrobaculum islandicum DSM 4184
A1RY08          423 TFDLLLLD 430  Thermofilum pendens Hrk 5
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