4HE8,6GCS


Conserved Protein Domain Family
NADHdh

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pfam00146: NADHdh (this model, PSSM-Id:395094 is obsolete and has been replaced by 459690)
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NADH dehydrogenase
Statistics
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PSSM-Id: 395094
Aligned: 435 rows
Threshold Bit Score: 116.795
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4HE8_C           16 KALLVVvgLLTAFA-FMTLIERRLLARFQVRMGPnrvgpfGLLQPLADAIKSIFKEDIVVAQADRFLFVLAPLISVVFAL 94  Thermus ther...
jgi:Ppro_2793     7 VLVNVI--LVLALApLFQGVLRKVTARIQSRQGP------PINQPYLDILKLLGKDDIESGEA-PVLQRFAAYLPLAVML 77  Pelobacter p...
agres:bpr_I1405   9 ALIYIL--LAPIIGgLMSGLDRVFSARMQGRQGP------PIIQPFYDVNKLLHKQTTVVNGIQ---------VLFVTVY 71  Butyrivibrio...
WP_013317237     13 ALLQAV--LLMAAApLLSGLSRVIRAKMHSRQGP------GVLQDYRDIVKLLRRQEMAPEHS-GGVFRLMPFILLGTML 83  Dickeya dada...
P77858           14 ALAQAV--ILLMLTpLFTGISRQIRARMHSRRGP------GIWQDYRDIHKLFKRQEVAPTSS-GLMFRLMPWVLISSML 84  Escherichia ...
WP_004234998     15 avvQAI--FLLLLTpLFTGISRQIRAKMHSRQGP------GIMQDYRDITKLLKRQSVAPRDS-GFIFRVMPYVLLSSML 85  Morganella m...
Q6L0T8           31 TLTQIV--TVIFISpLIAGIYENLKSKVELKKGP------SVFQPYYDLFKYIKKETIVPYNA-GFLFIYGPYLVFAILV 101 Picrophilus ...
WP_012514347      7 gilQIV--IFIALApAIKGFIHKIKLNLRGQKGP------SILQPYKDLIKLFRKEPVISKDA-SFISKIAPIVVLLATI 77  Hydrogenobac...
CBK43927         10 vvvqLA--LLLALSpFVVGLIRKVKARLQCRRGA------SLFQPYADLAKLFRKQPVISSTT-SWIFTAAPYIVFASTV 80  Nitrospira d...
jgi:Metfor_0143  13 ifpgFL--FLLAYSlFFQYIDRKLAARMQHRVGP------PLLQPLADFIKTLGKEVIDVKGVDRGAFSAAPLIALAAVM 84  Methanoregul...
4HE8_C           95 LAFGLIPFGppgsffgyqpWVINL-------DL--GILYLFAVSELAVYGIFLSGWASGSKYSLLGSLRSSASLISYELG 165 Thermus ther...
jgi:Ppro_2793    78 TIACLVPMGfka-----------------plSGsgDVLLLILLMTLAGICTLLAGLASGSTYSLIGINREMMCMITLEPL 140 Pelobacter p...
agres:bpr_I1405  72 LIFTIFTgs--------------------lfFAggDMLLVFFALSMSEVMLVLAAFSTNGPYSIMGAQRELLQMMCYEPM 131 Butyrivibrio...
WP_013317237     84 LVAMTLP----------------AvtdgspfGAagDIITLLYLFAVFRFFFSLSGLDSGSTFAGIGASRELTLGILVEPI 147 Dickeya dada...
P77858           85 VLAMALP----------------LfitvspfAGggDLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPM 148 Escherichia ...
WP_004234998     86 LLAMALP----------------VvtttslfSGagDLIIILYIFALFRFFFSLSGLDTGSPFAGIGASRELTLGVLVEPI 149 Morganella m...
Q6L0T8          102 LISFIIP---------------VVipepvyfTAsaDFLGGALLFSLASFIKILGSVDSGSNYSVMGAARASSFTYLGEAT 166 Picrophilus ...
WP_012514347     78 ISASFIP----------------IfspntllSFtgDVIAFMYVLGLSTFFIALYGLDQGSSFGGLGSAREMTIASLAEPT 141 Hydrogenobac...
CBK43927         81 AAGLLMP----------------VfvshtplNFagNIIALVYLLALGTFFLILAGLDAGSAFGGMGSSREAIVATLAEPA 144 Nitrospira d...
jgi:Metfor_0143  85 TAFLYIPII----------GASPL-------AFqgDLILVLYLMTLPTLTLFVVGWLSRNVFACVGAIRSVTQLFIYEVP 147 Methanoregul...
4HE8_C          166 LGLALLAPVLL------VGSL-----------NLNDIvnwqk---ehgwlFLYAFPAFLVYLIA-SMAEAARTPFDLPEA 224 Thermus ther...
jgi:Ppro_2793   141 FAVAIVMGALA------KGSF-----------NLDEVlsgsvy--gangmALSGFAMLVIMLLA-FQAFVGRAPFDISEA 200 Pelobacter p...
agres:bpr_I1405 132 TLLVAIGFYYA------NGSFmvddlihseipAIAQI------------------PGFFIGFVFiLIIKLRKSPFDLSTS 187 Butyrivibrio...
WP_013317237    148 LMLALLVVALV------AGST-----------NIGNIsvklas--ghwasPTATALALLACAFA-TFIEMGKIPFDVAEA 207 Dickeya dada...
P77858          149 LILSLLVLALI------AGST-----------HIEMIsntla---mgwnsPLTTVLALLACGFA-CFIEMGKIPFDVAEA 207 Escherichia ...
WP_004234998    150 LFLGLLVVALI------AGST-----------NIGSIsavms---qgwvsPTATFLAMLACGFA-TFIEMGKIPFDVAEA 208 Morganella m...
Q6L0T8          167 LITVFFAVAFItrtdnpYVTNhylvmhpfsylTLLHI------------------FASVAFFMV-FLFETGRIPVE-SEG 226 Picrophilus ...
WP_012514347    142 LMMIMFTFSLE------YGTS-----------NISEIfvkahs--hsfnvPIAYVFSLLALFFV-SMAENARIPFDNPET 201 Hydrogenobac...
CBK43927        145 MMLSILSIALT------AGST-----------NLSTIvhqsalmegvvvaPPAHLMALAALFIV-TLAETGRVPVDNPAT 206 Nitrospira d...
jgi:Metfor_0143 148 FFLVMLAPALM------AGTW-----------SVSEIvawqq---ahpwcAVLQPIGFVIALIA-LQAKLERTPFDIPEA 206 Methanoregul...
4HE8_C          225 ---EQEL---VGGYHTEYSSIKWALFQMAEYIHFITASALIPTLFLGGwtmPVLEv----------PYLW------MFLK 282 Thermus ther...
jgi:Ppro_2793   201 ---ETEI---MEGAMVEYSGPKLALFQYANMAKLVVYSALFVSLFV-----PWGSgla-----apiSFIL------FWVK 258 Pelobacter p...
agres:bpr_I1405 188 hhmHQEM---VKGLQTDLSGSNLALVEIAEWYDLVLMLGIVGMFFITNn--PI-------------SRVW------ALIA 243 Butyrivibrio...
WP_013317237    208 ---EQEL---QEGPLTEYAGAGLALVKWGISLKQVVVATLFLSIFV-----PFGKaetltavsllwGSLA------LIIK 270 Dickeya dada...
P77858          208 ---EQEL---QEGPLTEYSGAGLALAKWGLGLKQVVMASLFVALFL-----PFGRaqelslaclltSLVV------TLLK 270 Escherichia ...
WP_004234998    209 ---EQEL---QEGPLTEYSGSGLALVKWGIGLKQVVVAVLFLSIFF-----PFGSasvltagslllALGL------MLVK 271 Morganella m...
Q6L0T8          227 ---LMELgmiDGAFNYEYSGKLLAINKWSGYMKNYLLGSVLLNVFIF----PWFMf---------sGRLFfldvpvMILK 290 Picrophilus ...
WP_012514347    202 ---HLELtmvHEAMILEASGKYLAIFELSSYMKLLLFISIASNIFL-----PFLYssn-----mllNILF------YIIK 262 Hydrogenobac...
CBK43927        207 ---HLELtmiHEAMLLEYSGRYLALMEWAAGIKLLVFLTLIVNVFA-----PWGIatslapsaiavGLLV------YLGK 272 Nitrospira d...
jgi:Metfor_0143 207 ---ETEI---VAGPWTEMTGHRLALMKLAFDVSLVTGSALITALFLGGpevPWVItpawl--aalaGFGL------FLVK 272 Methanoregul...
4HE8_C          283 IAFFLFFFIWIRATWFRLRYDQLLRFGWGFLFPLALLWFLVT 324 Thermus thermophilus HB8
jgi:Ppro_2793   259 VFAMVLLVTTIAATHARYRIDQAIRY-FAIMLAVSLVTLAaa 299 Pelobacter propionicus DSM 2379
agres:bpr_I1405 244 VAVVFFLETLIDNLFPRVKYKTMLIVTWSVILAFAGTNLLIL 285 Butyrivibrio proteoclasticus B316
WP_013317237    271 LVVVFVIAAVIENSLARGRFLLTGRVTWL-GFGVAALAFVFY 311 Dickeya dadantii
P77858          271 VLLIFVLASIAENTLARGRFLLIHHVTWL-GFSLAALAWVFW 311 Escherichia coli K-12
WP_004234998    272 LLVIFVLASLVENSLARGRFLLTHHVTWL-GFGVAALGFVFY 312 Morganella morganii
Q6L0T8          291 WLLLMLILLFIETTLSKLRLYKVQDF-LATAFTLSIAFLIVs 331 Picrophilus torridus
WP_012514347    263 VIIFSIPIALLELSVAKFRFFRIPDLLMI-SFALATLGFVLY 303 Hydrogenobaculum sp. Y04AAS1
CBK43927        273 VAALALVIGVIESMFAKLRLFRVPEMLGA-AFILSLLALVFF 313 Nitrospira defluvii
jgi:Metfor_0143 273 TLAVLFILSTLRVATGRIRLDQLNDIGWKYIAGAAVFQVALV 314 Methanoregula formicica SMSP
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