Conserved Protein Domain Family
SGNH_hydrolase_YpmR_like

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cd04506: SGNH_hydrolase_YpmR_like 
Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Statistics
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PSSM-Id: 239947
Aligned: 22 rows
Threshold Bit Score: 217.886
Created: 2-Oct-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:active site [active site]
Evidence:
  • Citation:PMID 7773790
  • Comment:the active site resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases
  • Comment:the histidine side chain may be oriented by a backbone oxygen or by an acidic sidechain

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                       #                                
ZP_01173460  52 HVVSVGDSLTEGVGDSTGRGgylpyleeqleqekgvsqteflNFGVKGNRTDQLLKKLkssevr-saiseaDLVIITIGG 130 Bacillus sp. NRR...
ZP_00540328  53 TYVALGDSLTRGVGASNGNSyaaivgrklv---kkdrverfqNLAVSGARTEDLLKQLkqkevr-rtlsqaKVISVTIGG 128 Exiguobacterium ...
NP_981822    57 QIVSLGDSLTRGVGDKEGIGyigrmkedlq--kdykqkvaltNLAVSGAKMPDLLKQIessgaq-ysikqaDVIVLTIGG 133 Bacillus cereus ...
ZP_01169590  53 TYIALGDSLTRGVGSSKGEGfvsltgnqlk---ennlveryqNLGIRGARIEDLLEQLeqkevq-rtlkeaKIITITIGG 128 Bacillus sp. NRR...
YP_147495    58 DIVALGDSLTRGTGDESGKGyvgymvdelr--rqtdkpirvtNLAIRGLRSDGLLRQLgqpeiq-rqvamaDLIVMTIGG 134 Geobacillus kaus...
CAC95981     58 KITALGDSLTYGVGDTEGGGyvrvvenfyk---qkeknvenvNLAISGAKSGQLLKQLeqkevq-nqiksaDVVLMTIGG 133 Listeria innocua
AAY86848     50 KLVALGDSLTHGQGDESNNGgyvgvikekiehryhqtkvttvNYGVTGDRSDQILDRLnhqsqlrsdlqsaDVITMTVGG 129 Lactobacillus re...
CAD64263     58 NLVAVGDSLTEGVGDESEGGyvgqikktlt--tkqklkvtttNAGKSGDRSDQILARInkskvlqqkiakaDVITVTVGG 135 Lactobacillus pl...
AAK80965     63 NILVMGDSLAKGTGDEKGKGfsgyfadyfr--vknnrnvrldNIAVNGDVSNGLLQIVknkdte-nlikksNMIFISIGG 139 Clostridium acet...
ZP_00323480  53 KILALGDSLTQGVGDTKNQSgyqqrlakkitktkqikketiyDEGVSGERSDQILKRFktttkiqkeaaksDVLIVTAGG 132 Pediococcus pent...
Feature 1       #                                                                               
ZP_01173460 131 NDVmkvvrqnfsnl----nvsdftgqkaQYEKNLKEIIDtvrsenseTQIALIGLYNPFYkwfsditeisdimdnWNEAS 206 Bacillus sp. NRR...
ZP_00540328 129 NDLfnrgegvanf-----nakktaatiaTAQTNLAKTFKilrkenpdAVIFYVGLYNPFRasengqa-fdaivqeWNAKS 202 Exiguobacterium ...
NP_981822   134 NDLfpgweslgki-----dletyrpdteTFQNEAKKIIEeirklntdSPIFWLGLYNPFEdvedlkg-ssnividWNASL 207 Bacillus cereus ...
ZP_01169590 129 NNLfnsgeifsny-----seetalgileTEIPNLEKVFKnireinpdAVTLYTGLYNPFKqspdges-fdsiiqkWNESA 202 Bacillus sp. NRR...
YP_147495   135 NDLfqggealkld------rkqlneakrRYVANLDRIFAalrrfnseAVIFAIGLYNPFGdlddakw-tsavvrdWNFAS 207 Geobacillus kaus...
CAC95981    134 NDLfrggealddf-----ksdaikqaeaSYTNNLKQIYQtirklnpsAPVFHIGLYNPFMslenase-msavaneWNMQS 207 Listeria innocua
AAY86848    130 NDLmqileknvmgse-rqvtssvesgekTYQKKLIKLFDavrkenpkAPIFVMSIYNPFYtyfpdvtiinksinqWNQTT 208 Lactobacillus re...
CAD64263    136 NDLlqtlegsltsnntaknnatvakaqtLYANKLTKLFNklqslngtASVFVFSIYNPIYvnfpnvtsithyisqWNDQT 215 Lactobacillus pl...
AAK80965    140 NEVskfkfegnvs------aadlkdtenKYLNNVRDIFRlirdnnskCTIVFIGLYNPFGssigtdk--iellnsWNYQT 211 Clostridium acet...
ZP_00323480 133 NDLfqnlqkdvtesp-sqvavnvnrislTYQDNLENIFKyarklnpkIKIVMVGIYNPFYvyfpnvvaitdaintFNTTA 211 Pediococcus pent...
Feature 1                                                                           #  #        
ZP_01173460 207 REILSRYdytYFVDIKDIFEnka---------------------------------------edLLYTDYFHPNDKGYEL 247 Bacillus sp. NRR...
ZP_00540328 203 RTLGLKYd-iEIIDTFNLVRdv----------------------------------------krDLSSDQFHPNDSTYED 241 Exiguobacterium ...
NP_981822   208 EKLAVNNknvYITPTFDLFQnrg---------------------------------------kdLLYSDHFHPNEIGYTY 248 Bacillus cereus ...
ZP_01169590 203 RTLGLKYg-iQVVDTFNLVIda----------------------------------------krDLSSDVFHPNDTTYQQ 241 Bacillus sp. NRR...
YP_147495   208 AEVAARYpniVAVPTFDLFAlhv---------------------------------------ndYLYSDHFHPNAAGYKR 248 Geobacillus kaus...
CAC95981    208 QNLSQNEkniIYVPTFDLFQqng---------------------------------------aaYLASDKFHPNHAGYQF 248 Listeria innocua
AAY86848    209 QDTMNNYksmYFVNINKLMSygqyqtksqqqqlvkeeekanqgqvsqkrvieimnhkdknlnkyISTEDNFHPNHTGYVK 288 Lactobacillus re...
CAD64263    216 QTTVSQYkhtYFMDINWTMShgqyktaaqirklkkaasattltsltsskaitgaleaenktndlISTADNFHPNKRGYRV 295 Lactobacillus pl...
AAK80965    212 QNIISVDsnaVFIPTYDLFEydt---------------------------------------ekYLTIDNFHPNSSGYKA 252 Clostridium acet...
ZP_00323480 212 KATGDYFkhaTFVDINALSVgqyktlsqqqrlkkqsteddi--avveksqlekskfdtkeknnyLSDADHFHPNDKGYDM 289 Pediococcus pent...
Feature 1               
ZP_01173460 248 IADRVYRQ 255 Bacillus sp. NRRL B-14911
ZP_00540328 242 IANAAILA 249 Exiguobacterium sibiricum 255-15
NP_981822   249 MADRLVQN 256 Bacillus cereus ATCC 10987
ZP_01169590 242 IADSTYLI 249 Bacillus sp. NRRL B-14911
YP_147495   249 IGERVASL 256 Geobacillus kaustophilus HTA426
CAC95981    249 IGNRVTEV 256 Listeria innocua
AAY86848    289 IADQLFKV 296 Lactobacillus reuteri
CAD64263    296 FTTKLYQT 303 Lactobacillus plantarum WCFS1
AAK80965    253 IAQRIEEV 260 Clostridium acetobutylicum ATCC 824
ZP_00323480 290 MADKIFKA 297 Pediococcus pentosaceus ATCC 25745

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