1R5V,3C60


Conserved Protein Domain Family
MHC_II_alpha

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pfam00993: MHC_II_alpha (this model, PSSM-Id:395789 is obsolete and has been replaced by 460019)
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Class II histocompatibility antigen, alpha domain
Statistics
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PSSM-Id: 395789
Aligned: 87 rows
Threshold Bit Score: 64.1231
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1R5V_A          2 EHTIIQ-AEfylLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEA---QGALANIAVDKANLDVMKERSNN 77  house mouse
XP_011484642   26 EDFGILgCS-----DYDQEYMYALDGEEKWYADYKKETGVGPQLPLGGHFINPDg-yQFAKVYEQVCRRNLKALKKTTKG 99  Japanese medaka
8_pfamImport    1 KDIGIVgCS-----DLDGEFMYGLDSEELWYADFSKGEGVYGTPPFIDPFRY-------------TCKYNLDVDRKGNKD 62 
XP_013130407   23 TDIHVIgCS-----DFNGEVMFGLDREELWYADFEKQMGVSPQPSFIDPISFGAgayKTAVSNLNTCRQNLQITREGIKD 97  Nile tilapia
XP_003459305   23 SDIAIGgCS-----ESDGENMYGLDGEEIAYADFNKQEFIYPQPPFIDPITV-PggyESSVAFQHSCRENMKLFGKGMKD 96  Nile tilapia
XP_005465960   23 SDIAVGgCS-----ESDEENMYGLDGEELAYTDFNKKEEIYPLPPFIDPITYGEdayESSVAFQKTCRKNMKQFGEGMKD 97  Nile tilapia
XP_014331012   23 DSFRVIgCS-----DTDGLDMMTLDGEEVWHADFIHETGVDTLPDFVSHPSFSGl-yEQSVGQQQLCKNNLKIIRTGLKD 96  southern platy...
15_pfamImport   1 IDINVIgCK---SDDPVAQDEAQLDGDEMFYADFDKKEMILTLPAFADSFGVDPgwvQGAIANRQICINNLEVAIKAENN 77 
XP_019210811   23 GDVHINgCS-----DFDAEDMYGLDGEEVAYADFNNHTEVYILPPFAEPMIY-PgayKQAVTELKVCRHNLKALRAVMKD 96  Nile tilapia
XP_005464763   23 EDIGIVgCS-----DSDGEDMYGLDGEEVRYADFKKQEDINSLPPFADLIT-CPgcyEQAVANQQVCKQNLQTLRKMMKD 96  Nile tilapia
1R5V_A         78 TPDA 81  house mouse
XP_011484642  100 LQLE 103 Japanese medaka
8_pfamImport   63 MPTE 66 
XP_013130407   98 FPPL 101 Nile tilapia
XP_003459305   97 YPPE 100 Nile tilapia
XP_005465960   98 FPPE 101 Nile tilapia
XP_014331012   97 IPDP 100 southern platyfish
15_pfamImport  78 PPEN 81 
XP_019210811   97 YPSN 100 Nile tilapia
XP_005464763   97 YPLE 100 Nile tilapia
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