Conserved Protein Domain Family
LRIF1

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pfam15741: LRIF1 (this model, PSSM-Id:406228 is obsolete and has been replaced by 434899)
Ligand-dependent nuclear receptor-interacting factor 1
This family of proteins interacts with the retinoic acid receptor RARalpha and inhibit it's ligand-dependent transcriptional activation.
Statistics
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PSSM-Id: 406228
Aligned: 10 rows
Threshold Bit Score: 852.195
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_016159738   1 MYRVIQTTGPDGKNLLKLLPISKTSGSFMPLVQPPAMPNNSNANVSSPVHLTFKTQLGNTTAPSSVKIPIFQPPNPGRII 80  Collared flycat...
NP_001120957  26 MYQVVPTIGTDGKKLLQLLPIPKSSGNLIPVVQSPVMSHGLKGNTEKPVQVTFQTQISSSSTSASVQLPVLQPANTTKYF 105 Norway rat
Q5T3J3        28 MYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQSSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYF 107 human
XP_007485183  28 MYQVVQTTGLDGKNLLKLLPIPNSSGNLMPLVQSSVTSDTSNGNISNPVHVTIQTQLASSPANASIQFPVFQTTNSGNYI 107 gray short-tail...
XP_007664971  16 MYQVVQTSGLDGKNLLKLLPISNSPGNPMPLVSSSVTTDSSKANLASPVHVTFQTQLNSLSTGPSIQFPVFQPVTAGKYI 95  platypus
XP_005987651  27 LYQVVQITDANGKNILKLIPASKISRSVAPTIPSSSITKGSEVNMLTPVTLQLQT---TAMNSISSEVSDFHHPTK-KLF 102 coelacanth
XP_419232     27 MYRVVQTTGPDGKNLLKLLPISKSSGNFVPIVQSSAMSNNPKVNVSSPVHLAFKTQLASTAAPSSVKIPVFQSPNSGKII 106 chicken
XP_010722320   1 MYRVVQTTGPDGKNLLKLLPISKSSGNSVPIVQSSAMSNNPKVNVSSPVHLAFKTQLASTAASSSVKIPVFQSPNSGKII 80  turkey
XP_027300844  27 MYRVVQTTGPDGKNLLKLLPISKSSGNFVPIVQSSAMSNNPKGNISSPVHLTFKTQLANTTAPSSVKIPVFQSPNPGKII 106 mallard
XP_012405046  38 MYQVVQTTGLDGKNLLKLLPIPNSPGNLLPLVQSSVTSDTSKGNISNPVHVTIQTQLASTPTTASIQFPVFQATNSGNYF 117 Tasmanian devil
XP_016159738  81 LTRTLDKQESARAGSEKESLIP-SEAASAQSSCM---AVDGVSL-QNIAItSSSHQSSMTCMVVNTKPLPVTVKSPVLPS 155 Collared flycat...
NP_001120957 106 LTGTIDTSGKDRVTSMGTGNFT-PPISNTQNHGV---KIHRLTR-QTFTI-PPSTQNDSSYFIVNTPSLPANVNSSTLPS 179 Norway rat
Q5T3J3       108 LTRTVDTSEKGRVTSVGTGNFS-SSVSKVQSHGV---KIDGLTM-QTFAV-PPSTQKDSSFIVVNTQSLPVTVKSPVLPS 181 human
XP_007485183 108 LSRAVDKSENVRVASVGKESLT-SSCSTVQNNAM---KVERLAL-QKIAVsPATPQSDTTYMLVNTKNLPVTVKSPVLPY 182 gray short-tail...
XP_007664971  96 LTRTLDPPENVRTTSAESKSLP-SKVAAAANAPTppgAADRLSLpQNAIVsPPSTQGDTTYMLVNPKNLPVMVKSPGLPS 174 platypus
XP_005987651 103 VTRPVDPKEILGVTHGPTVVTSgSPISLTKNAAL---TVANPSS-QRLLA-SSSNSKDKMYMLISSKHLPGTVKSVALPS 177 coelacanth
XP_419232    107 LARTLDKQEGFKAGSDKESLTT-ESAADIQSSCV---SVDRQSL-QNAAVtSSSEQSHTAHMSVKTKDNPISVKPPVLPS 181 chicken
XP_010722320  81 LARTLDKQGGVRAGSDKESLTT-ESAADIQSSCV---SVDRRSL-QNAAVtSSSEQSHTAHMSGNTKDNPISVKPPVLPS 155 turkey
XP_027300844 107 LTRTSDKQESVRAGSETESLTA-KSAANIQSSCV---SVDRLSL-QNIAVtSSSNQSNSAYMFVNTKNLPATMKSPVLPS 181 mallard
XP_012405046 118 LSATVDKSENARVASVGKESL--ASASTAQSNSM---KVERLAL-QKIAVsPSTTQGDTTYMLVNAKNLPVTVKSPVLPY 191 Tasmanian devil
XP_016159738 156 GHHLQIPADAEVKSVPASLLPPSIQQKILAAAATNVSGGADSTKTP-MVIYMSPVNTVKTsqVLPKHLQSFCPKP--AAe 232 Collared flycat...
NP_001120957 180 GPPLTIPAHAEVKPVLASPLPPLVQQKILGTVTTSTSGTVEASQIP-AVFYVSPVNSVKI--IVDKKTQNIYHKP--VT- 253 Norway rat
Q5T3J3       182 GHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMP-TVIYVSPVNTVKN--VVTKNFQNIYPKP--VTe 256 human
XP_007485183 183 GHHLQIPANAEVKSVPASSLPPPIQQKILAAAATNTSGTTEASKVP-TVIYVSPVNTVKS--VVSKTYKNICPKPpnPTe 259 gray short-tail...
XP_007664971 175 GHHLQIPAHAEVKSVPASSLPPAIQQKILAAAAPGPSGSTEAAKTP-TVIYVSPVNTVKT--VVSKCWQAICPKPs-PPe 250 platypus
XP_005987651 178 GQHIRIPADAQVKSLAASSFSPAIQEKILVTAATNISGTNEANKTPaSVIYVSPVNTVKT--VVTKPLPVISPKPvvKPs 255 coelacanth
XP_419232    182 GHHLQIPADAEVKSVPASFLPASIQQKILAAAATNVTDGADSKKMP-TVIYVSPVNTVKT--ALPKCLQAVDHKP--APd 256 chicken
XP_010722320 156 GHHLQIPADAEVKSVPASFLPASIQQKILAAAATNVSDGADSKKMP-MVIYVSPVNAVKT--VLPKRLQADDPKP--APd 230 turkey
XP_027300844 182 DHHLQIPADAEVKSVPASFLPPAIQQKILAAAATNVSGGADSTKIP-TVIYVSPVNAVKT--VLPKRLQTICPKA--ATd 256 mallard
XP_012405046 192 GHHLQIPANAEVKSLPASSLPPPIQQKILAAAATNTSGTAEASKIP-TVIYVSPVNTVKS--VVPKTFKNICPKPpnPTe 268 Tasmanian devil
XP_016159738 233 vsktliVTTAQKG-S---GSSPEPVTSEGQQCQQTPMKWIVQETAPLSAACLIPVKSSNNVASKILKTL-SDTKNVE--- 304 Collared flycat...
NP_001120957 254 ------FSTSQIP-P---NVATKTQLNSGQHPQAAPVNLIFQEYLQPGIPCLVPVKSSNNVPSKVFNTF-VDRKTLG--- 319 Norway rat
Q5T3J3       257 iakpviLNTTQIP-K---NVATETQLKGGQHSQAAPVKWIFQDNLQPFTPSLVPVKSSNNVASKILKTF-VDRKNLG--- 328 human
XP_007485183 260 paksmvLNTSQTSvK---NPGTDVSNNEGQQSRDAPMKWVVRENPQ-STPCLVPVKSSNNMASKILKTL-MDMKNVE--- 331 gray short-tail...
XP_007664971 251 askaviLTGPPTPaK---GAAPDVGAKASPPAQGTPMKWVVQRNPQCSSPCLVPVKSSNNVASKILKTL-ADMKNVQ--- 323 platypus
XP_005987651 256 tsltriTEAYEMEnRfttGMIASPALPTSNNIAQSPMKWVVQENPQFSAPCLVPVKSSTNAASQILKSLaADLQHVEqpl 335 coelacanth
XP_419232    257 vsktllMTAPQKA-H---SSSPETGMSDGQQCQHTPMKWIVRESPQLPAPCLIPVKSSNNVASKILKTL-SDMKNVE--- 328 chicken
XP_010722320 231 vsktllMTAPQRA-H---SSSAETGTSDGQQCQHTPMKWIVRESPQLPAPCLIPVKSSNNVASKILKTL-SDTKNVE--- 302 turkey
XP_027300844 257 vsktliMTATQMA-----NCSSETVKSDDQKCQQTPMKWIVQESPQLSSPCLIPVKSSNNVATKILKTL-SDMKNVE--- 327 mallard
XP_012405046 269 aakpmiLNTSQTPvK---NPAADVTNNEGQQSRDTPMKWVVKENPQ-CSPCLVPVKSSNNMASKILKTL-MDMKNVE--- 340 Tasmanian devil
XP_016159738 305 VNPANILPPCSNGPGGNQTKITPLKENALVMYNGKVyLLTKRGSDVLSA-----QAEKQT--------SSSADGLLkKET 371 Collared flycat...
NP_001120957 320 DNTVGTPLLSTNSSSRTQSISVPIKDDGLIMFNGKV-LLNKKGTYGLPS-----KIDQQN--------SVSSDIPL-KDS 384 Norway rat
Q5T3J3       329 DNTINMPPLSTIDPSGTRSKNMPIKDNALVMFNGKVyLLAKKGTDVLPS-----QIDQQN--------SVSPDTPVrKDT 395 human
XP_007485183 332 TGSLNMSSLCSSTSSGTQAKITPIKDNALVMFNGKVyLLAKKGSEVLPS-----QTDQQN--------SAAPDASPrKDT 398 gray short-tail...
XP_007664971 324 STSAGILPLCSGGSAGSQSKITPIKDNALVMFNGKVyLLAKRGSEVLVP-----QVEPQSppssssspSSSSDIMSrKDP 398 platypus
XP_005987651 336 STNAAMPLLSTNSPESPSVKSAAAKKNALVMCNGKVyFMAKQGPEVGTTspkqnQSKDQA--------TCSQSNEVqNLQ 407 coelacanth
XP_419232    329 VNSANILPLCSSGSGVSQTKITSIKDNALVMYNGKVyLLTRRGSDVLSA-----QADMQA--------SSSYSASLkKGT 395 chicken
XP_010722320 303 INSANILSHCSTGSGVSKTKITSIKDNALVMCNGKVyLLTRRGSDVLSA-----QADVQA--------SSSYGASLkKGT 369 turkey
XP_027300844 328 VNSANILPLCSSGPGGSQTKITPFKDNALVMYSGKVyLLTKRGSDVLSA-----HVDKQA--------SSSSDASLkKET 394 mallard
XP_012405046 341 TSSLNMPPLCSGTSGGTQAKITPIKDNALVMFNGKVyLLAKKGSEVLPS-----QTDQQN--------SVASDASPrKDM 407 Tasmanian devil
XP_016159738 372 PKQIDSTKVNKITSKVVNLVLSK-SKgvvLSQKDPKPCTVSKNSSPVA--LRNDLKSTPAAPLVSG---ANQQDPTVIQR 445 Collared flycat...
NP_001120957 385 SQVVSSSLVTEISREVLSSVLVK-SK---SFQLKTKSLSNSQPAPMAHikPEKSEKVERPSFSVTSphtTNQSTHCLKQS 460 Norway rat
Q5T3J3       396 LQTVSSSPVTEISREVVNIVLAK-SK---SSQMETKSLSNTQLASMANlrAEKN-KVEKPSPSTTNp-hMNQSSNYLKQS 469 human
XP_007485183 399 SQISNSSS---ITNEVVNIVLAK-NKt--APQKETKLLSDTQLASEPApnLEKNNKVECASLSALNpqhAKQPISHVEQC 472 gray short-tail...
XP_007664971 399 PQLADSS-VSKITSEVVNIVLAKrNNslaTPQKDTKEGGEGQLDSESA--TEKKPRAGSALLSTPRphkVNTPIGQGEQG 475 platypus
XP_005987651 408 ARTLDSVAISKIS-KAVRAVLSK-NMgskLPQIN---LPRSEKSVQTT--LKRHVKTE-ACQEFPStkkENQRVLHVK-- 477 coelacanth
XP_419232    396 SKLIDSTEVTKISSKVVNLVLSK-SKgmpLPQKDPKVCSNSKVSSSGG--LRNDLKSTSAALVTPS---AEEQSSTVNRG 469 chicken
XP_010722320 370 SKLIDSTEVTKISNKVVNLVLSK-SKgmpLPQKDPKVCTNSKVSSPGS--LRNNLKSVPAALVIPS---VEEQSSTVNQG 443 turkey
XP_027300844 395 SKLIASTEVTKITNKVVNLVLSK-SKgmvLSQKDSKMGANAKVSPSAG--LRSDLKSAPAALVTPS---VKQRSSTVIQG 468 mallard
XP_012405046 408 SQTPNSNSVTKITNEVVNIVLAK-NKt--IPQKETKLISDTQLASEPVpsLEKNNKVECTSLSAQSpqhVTQPL-CLEQC 483 Tasmanian devil
XP_016159738 446 QS--LPFTKSVScSGVIPVPAVGMQENVwq---------nGKDMSHS----PKAAGAvl-pqAKQECAVGEDWPKIPCEK 509 Collared flycat...
NP_001120957 461 KI--VFINPVFS-DGFRTGQNTPRKENL------------IQNIRSS----VDAATV-----TSQQCVFRDQEPQTQYEM 516 Norway rat
Q5T3J3       470 KT--LFTNPIFP-VGFSTGHNAPRKVTAviyarkgsvlqsIEKISSS----VDATTV-----TSQQCVFRDQEPKIHNEM 537 human
XP_007485183 473 NT--VPIKLNLP-DVISPVQNAIKETSInh---------tKEA--GS----ADDPTI-----TSQHCVPTHQEPKNQGEM 529 gray short-tail...
XP_007664971 476 KTaaLPREPSLP-RGVGTDANAILERDGgs---------sKEKFSSP----ADPATV-----SSHRCTFTDQKPKIQGAM 536 platypus
XP_005987651 478 -----PQNEELQ------------RENGdlsnf--svskeREEILNTipknISLMSSelygrTGDMQQHSDVNPS--SDT 536 coelacanth
XP_419232    470 KS--LPFMESIS-SGMTPVTAVGMQETTyq---------dDKEMIHS----SKAASAvl-pqSEHECAFSEDWQKVQCKK 532 chicken
XP_010722320 444 KS--LPFMESIS-SGMTPVMALGMQENAcq---------dGKEmiHSpkaaSAVLpqseh-----erafsEDWQKVQRKK 506 turkey
XP_027300844 469 KS--LPLTMSIS-SGATPITAVGTQENVfq---------gGKEMIHS----PRAASAvl-pqSKQECAFSEDWQKVQHEK 531 mallard
XP_012405046 484 KT--APIKLNLP-DVVSPAQNAKKETSVsh---------tKEK--SS----SDDTTT-----TSKHCVYTDQEPKNQGEM 540 Tasmanian devil
XP_016159738 510 MDSPGKVIQIKHQEHPHW---------RQYLELRKKFGLFKEERVYLMRIPLRAFCEnpeERVCSSDSLE---RKNDSCs 577 Collared flycat...
NP_001120957 517 ASILKKDIQERSNKKYSQgnhtkasylKNDAEFKKIFGLTKDLRVCLTRIPDHLSST---KSFDSFNNLM---KSSSYK- 589 Norway rat
Q5T3J3       538 ASTSDKGAQGRNDKKDSQgrsnkalhlKSDAEFKKIFGLTKDLRVCLTRIPDHLTSG---EGFDSFSSLV---KSGTYK- 610 human
XP_007485183 530 ALVLETHFQSRSQKESCR---------REYAELRKKFGITKDLKVNLTRILAFDST----TSLYSPSSLT---NSVSSK- 592 gray short-tail...
XP_007664971 537 APAPEGEAPAGREPKTCR---------KQEAELRKKFGLVRDLRVRLTRIPVFRDAE---ERKSPPGGLE---NHHSFQ- 600 platypus
XP_005987651 537 MFSSVKETLGRSKEKGLYn--------ESDDQLRKKFGLNADVRVHLNKIPIQSFSVv-sKKHASPSAVT---EMEDPS- 603 coelacanth
XP_419232    533 MYSVGKVNQIRDQEKPHW---------KQYLQLRRKFGLYKEERVYLKRIPLTTSCEkpdERLCSSNSLE---RKNDSCp 600 chicken
XP_010722320 507 MYSLGKVNQIKDQEKPHW---------KQYFQLRTKFGLYKEERVYLKRIPLTTYREkpd---erVSSSNsleRKNDSCp 574 turkey
XP_027300844 532 MDSQGKVNQIKHQEKPHW---------KQYLELRRKFGLTKEERVYLKRIPLITSSEkpdERVCSSNNLK---TRNDSCv 599 mallard
XP_012405046 541 AFVLETYTHSRSQRESCP---------KEYAELRKNFGITKDLRVRLTRIPLFDS-----TSLYSPTSLT---NNISSK- 602 Tasmanian devil
XP_016159738 578 ssslDVEIRSHhqg----cvEEKKiivdleE-----DLIRKRKINSSPLLDSGKRR-----RTSIKPATSPS--LEITSS 641 Collared flycat...
NP_001120957 590 ----DANVVMK---------EEKK------Q-----SFSKKRNAKPMKKMDYTKRR-----KIENASDMVMNvmNGTDVA 640 Norway rat
Q5T3J3       611 ----ETEFMVK---------EGERk----qQ-----NFDKKRKAKTNKKMDHIKKR-----KTENAYNAIIN--GEANVT 661 human
XP_007485183 593 ----ESEIIVDltt----gnDEESqelilqQ-----DLDKKRKAKTVIMEDNTKKK-----KSGNDGSTSGL--IGTDST 652 gray short-tail...
XP_007664971 601 ----EAKFRVEptg----gkEEPNkketveQ-----DLDKKRKAK-VQKTTSAKRR-----KPGPDCPVSPN--PHGNSP 659 platypus
XP_005987651 604 ----GMEFMTKldspmtkniEGNEvkikseQ-----GSARKRKSADAEIVGQAKKRpntfeNSSNRDSESPC--STSSGP 672 coelacanth
XP_419232    601 ssslDVTITDQhqe----wiEEEKailnleE-----GLSKKRKTK-SSLPDSGKRR-----RTSVKSATSSS--TEDSSP 663 chicken
XP_010722320 575 ssslDVTITDQhrkcikee----kvilgleE-----GLSKKRKTK-SSLPDSGKRR-----RTSVKSATSSG--TEDSGP 637 turkey
XP_027300844 600 ssslDVTITNQhqe----cvTEEKiiv------dleDTSKKRKIKSSSVSDSGKRR-----KTSVKSTTSSN--SEDAGP 662 mallard
XP_012405046 603 ----ESKIIVDlts----ekEEESq-----EltvqqDLDKKRKAKTVMKVDSTKKK-----KSGNDVNSSMD--TGTDHT 662 Tasmanian devil
XP_016159738 642 TSSAL--AISPPAASpQPSVPPGSATGSQGRDSEQDVLPWHSDTAHPGISvlVTSEEDTSVLEGSFRDDAFPVAPPDLDE 719 Collared flycat...
NP_001120957 641 NSQLLssILPISDIA-QHNIITSHSTTREDKRTETEHCCHEKQEKGTLSS--STSFEQSNYFNKNYTEDIFPVTPPELEE 717 Norway rat
Q5T3J3       662 GSQLLssILPTSDVS-QHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNS--NAAYEQSHFFNKNYTEDIFPVTPPELEE 738 human
XP_007485183 653 SPQILnsISPDSALSlHSSNLIGYTKFSEENSSELELPNQDGLDRSTDSPasASFEQDPPDSQDCYIDDSFPTTLPELDE 732 gray short-tail...
XP_007664971 660 RPQRQpsGGARSAESrEAGHPVT-TSPVQETSSEPEACSPNNLPSSTWSPacALFEPDLPICQGAFTEDTFPSTPPELDE 738 platypus
XP_005987651 673 NSKRFssKLVKTQERfPANSEADSKVLFLEQKSEESSNSNSAVEKENMNSilGTSAEPEKHHGEICTGDFFPVEPLDSDI 752 coelacanth
XP_419232    664 SSITHnrSVSPPPALsQQSISTDFISST---DAEREPSSQNSDVTDSDIPvlVSCEDHASLFEGSFRNDTFPLTPPDLDE 740 chicken
XP_010722320 638 SSITLnrSVSPPPALlQQSISTDFISSA---GAEQEPCSQNSDVTDSDIPvlVSSEDHASLFEGSFRDDAFPLTPPDLDE 714 turkey
XP_027300844 663 SSILLnrSASPPPVLlQQSISTDFVTSSVGRDSEQETCSQNSDVIDSHIPvlVSCEDHTSVFEGSFRDDAFPLTPPDLDE 742 mallard
XP_012405046 663 IPQVLnsTLPNSALLpQSNNLTGCMKSHQENSPELELHAPGGLDRGTRSPasVSFEQDPPDSQDCYIDESFPTTLPELDE 742 Tasmanian devil
XP_016159738 720 TIRDEKIKRLKQLLREREAALEEMRREMQQ 749 Collared flycatcher
NP_001120957 718 TIRDEKIRRLKQILREKEAALEELRKKMHQ 747 Norway rat
Q5T3J3       739 TIRDEKIRRLKQVLREKEAALEEMRKKMHQ 768 human
XP_007485183 733 TIRDEKIKRLKQLLKEREAALEEIRKKMQQ 762 gray short-tailed opossum
XP_007664971 739 TIRDEKIKRLKQLLREREAALEEMRKKMHQ 768 platypus
XP_005987651 753 TPGDEKIRKLKELLREREAALEEIRKKMFY 782 coelacanth
XP_419232    741 TIRDEKIKRLKQLLREREAALEEMRKKnaa 770 chicken
XP_010722320 715 TIRDEKIKRLKQLLREREAALEEMRKKnaa 744 turkey
XP_027300844 743 TIRDEKIKRLKQLLREREAALEEMRRKMQQ 772 mallard
XP_012405046 743 TIRDEKIKRLKQLLKEREAALEEIRKKMQQ 772 Tasmanian devil
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