4B6H,5JP4


Conserved Protein Domain Family
PNRC

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pfam15365: PNRC (this model, PSSM-Id:405947 is obsolete and has been replaced by 434667)
Proline-rich nuclear receptor coactivator motif
The PNRC family, proline-rich nuclear receptor coactivator, is found in eukaryotes. Studies in S. pombe show that the proteins carrying this motif are mRNA decapping proteins.In addition, this motif is found in Saccharomyces cerevisiae two intrinsically disordered decapping enhancers Edc1 and Edc2, which show limited sequence conservation with human PNRC2. This motif in the N-terminal domain serves two purposes: it enhances the activity of the catalytic domain by recognizing part of the mRNA cap structure (i.e. activation motif), and secondly, it directly interacts with the decapping activator Dcp1. Mutation in the (YAG) sequence led to los of activity of activate the decapping complex. Hence the activity of the family members involved in mRNA processing mechanisms depends on YAG activation motif that is 11-13 residues N-terminal of a conserved LPxP Dcp1 interaction motif.
Statistics
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PSSM-Id: 405947
Aligned: 101 rows
Threshold Bit Score: 23.091
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4B6H_C        107 YAGAKF--SEPPSPSVLPKPP 125
12_pfamImport   1 YAGAQF--AQSPPPSVLPKPP 19 
19_pfamImport   1 YAGAKF--AQSPSPSVIPMPP 19 
EDK42926      177 YAGSSF--HSSPAALALPKPK 195 Lodderomyces elongisporus NRRL YB-4239
EGV61110       90 FAGSSF--HSSPEALNLPKPT 108 Yamadazyma tenuis ATCC 10573
XP_003668883  140 FAGSTFanNIPLE-SSLPKPS 159 Naumovozyma dairenensis CBS 421
EER34549      194 YAGSSF--HSSPDAFNLPKPS 212 Candida tropicalis MYA-3404
CAY72188      149 YAGSSF--HQSPSAVSLPKPS 167 Komagataella phaffii GS115
P53080        153 YAGSTFatNGPREAKNLPKPS 173 Saccharomyces cerevisiae S288C
XP_002127241   86 YAGARF--HSPPTADALPKPP 104 vase tunicate
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