1JCU,1HRU


Conserved Protein Domain Family
Sua5_yciO_yrdC

?
pfam01300: Sua5_yciO_yrdC (this model, PSSM-Id:396047 is obsolete and has been replaced by 460153)
Click on image for an interactive view with Cn3D
Telomere recombination
This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.
Statistics
?
PSSM-Id: 396047
Aligned: 116 rows
Threshold Bit Score: 133.773
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1JCU_A             21 SVMEGGGIVIYPTDTIYGLGVNalDEDAVRRLFRVKGRSpHKPVSICVSCVDEIPRFS---RPSGDAMElmerilpgPYT 97  Methanothe...
Q7VJB7            216 QKIKAGKIVAIKGVGGFNLVANasNVQVIKTLRNRKNRP-HKPFAVMFKNLQDISSVAhinEEEKRALLsp----qaPIV 290 Helicobact...
jgi:HY04AAS1_0046 207 KDLKDSKIIALKGLGGFHLICNalDEKAVRTLRERKKRS-SKPFGIMFKSLEEVLKYLepkEDEIKALTsv----qkPIV 281 Hydrogenob...
USDA:Abu_1423     210 NLIKDGYVIAVKGIGGFHIVCDatNDKVVNKLREIKNRP-NKPFAVMFNNINSIKQYTnmnYQEEEILTsk----ekPIV 284 Arcobacter...
Q31DZ8            222 QRLKTSGLVAFKGVGGFHLLCDatDSETVTRLRQKKHRA-TKPLAVLCANLEMAQQLAhlaPHEIELLTse----vkPIV 296 Hydrogenov...
Q0PAP5            209 kFLKEGKILAIKGIGGFHLMCDafNEEALKTLRLRKNRP-KKPFALMCKDLQSAKELAfidEKEEALLGgv----laPIV 283 Campylobac...
WP_012083418      209 QLLLDGNILAVKGVGGYHLMCDatNEEAVAKLRERKRRP-SKPFAVMVKNMDMAHQLAvisSKEEALLEsk----erPIV 283 Sulfurovum...
Q7M9N8            168 KLIKKGHIVAVKGIGGFHLVCDatKNRVVMELRERKKRP-TKPFAVMFRSVFEIGKCTelsPIEEATILsp----erPIV 242 Wolinella ...
Q081W1            218 EMINRGGIVAIKGLGGFHLVCDatNNDAVAALRQRKQRL-AKPLAIMVTNLAQAKLCVsgtETEWQVLTsp----ekPIT 292 Shewanella...
WP_011706335      232 SALQAGALIAVKGMGGYHLVCDarNKQSVARLRTLKRRE-RKPLAVMMGSLAEAKLHVtgcEAEWQLLAsq----arPIT 306 Aeromonas ...
1JCU_A             98 VVLErneli------------------pdvitGGSSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVR 157 Methanothe...
Q7VJB7            291 LLERhfksegiin-----------eecfnliaPQIQSVGAILPYNGIMHLLFTLldmpLIFTSANLSGEPIITHAQELRQ 359 Helicobact...
jgi:HY04AAS1_0046 282 LIKRkspyf-------------------eeacKGLSSVGAFLAYTGIHLRLFDFidfpIIATSGNISDTPICKDNDKAKS 342 Hydrogenob...
USDA:Abu_1423     285 LVKKrpntnl-----------------ssyiaPNISKLGCFIANCGIHHLLFKYlqnpIVATSANLKDEPIIRSKDEIIG 347 Arcobacter...
Q31DZ8            297 LVEKrsdtal-----------------cdaiaPNINQLGVFLAYTPLHHLLFQYidfpLVATSANLSGEPILYEVSRVFE 359 Hydrogenov...
Q0PAP5            284 ILKAkkaf--------------------sliaPDVDKIGIMLAYTPLHLLLFEYFkgSLVATSANLSGESIIKDEFNLCK 343 Campylobac...
WP_012083418      284 LLNAkrqtl------------------nahvaPNISRIGLFLPYTPLHLLLLHTlnrpLVATSANVTDEPICTDRESLEK 345 Sulfurovum...
Q7M9N8            243 LISKrrphrlekf-----------liscdgvaPRVGTMGVFLPYSPLHSLLMEQakipLVFTSANLSGEPLIRDFKELCE 311 Wolinella ...
Q081W1            293 LMTKrvasvdgkdngrdncgnihpialspllaPGIDRLGVFLPYTPLHHLLMQRlhkpIVATSANRSGEPIIANQAEIEQ 372 Shewanella...
WP_011706335      307 LLRKrknddrpsksq------lttaplaegiaPGIPYLGVMLPYTPLHQLLLDAcaipLVATSANGRGSPILIECEAVIR 380 Aeromonas ...
1JCU_A            158 DL-----DAVDLVLDAGd-CLDMEPSTVIDLTVNPPRVLRRG 193 Methanothermobacter thermautotrophicus
Q7VJB7            360 KLgg-anAVYDVMLDYNrdICNPIDDSIVRFMAGKMRILRLA 400 Helicobacter hepaticus
jgi:HY04AAS1_0046 343 KLk----DIADGFFMHNrdIKRPIDDSVIKLIDNDVSIIRLA 380 Hydrogenobaculum sp. Y04AAS1
USDA:Abu_1423     348 KLg----NIVDFVLDYNrdIVNSSDDSIIQNVENYKIKLRNA 385 Arcobacter butzleri RM4018
Q31DZ8            360 KLchpdrALVEAVLDFDreIVNPSDDSIVQSINGKPMILRLG 401 Hydrogenovibrio crunogenus XCL-2
Q0PAP5            344 KLd----KVFDFYLDYDreIINASDDSIAQVVNGETMFLRTs 381 Campylobacter jejuni
WP_012083418      346 -Ls----DVYDYVLDHNrkIVNGCDDSVVMVVREQKVTLRRA 382 Sulfurovum sp. NBC37-1
Q7M9N8            312 KLs----GVFDYYLDHDreILNPCDDSVVTIQNNKFQVIRRA 349 Wolinella succinogenes
Q081W1            373 HLs----HVVDGILGHNrpIINACDDSVVQVIDGQLQVIRLA 410 Shewanella frigidimarina NCIMB 400
WP_011706335      381 ELg----SEIDGILDHNrpILHPCDDSLVQWAGRRRQTLRLA 418 Aeromonas hydrophila
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap