Conserved Protein Domain Family
PHA02614

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PHA02614: PHA02614 
Major capsid protein VP1; Provisional
Statistics
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PSSM-Id: 222910
Aligned: 24 rows
Threshold Bit Score: 460.611
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
165974002   1 MAPKRKASSTCKtpkrqcipkpgcCPnvASVPKLLVKGGVEVLS-VVTGEDSITQIELYLNPRMGVNspd--lptTSNWY 77 
224460774   2 PPAKRKGECPGAapk------kpkDP--VRVPKLLIRGGVEVLE-VKTGVDSITEVECFLTPEMGDA--------NEHLR 64 
9626486     1 MSRMRKNMNPPKkgl-------kgQP--SPVPKLIIKGGIEVLG-LRTGPDSTTTIELFLNPRMGQSt-------ESEYY 63 
9628646     2 APTKRKGERK--------------DP--VQVPKLLIRGGVEVLE-VKTGVDSITEVECFLTPEMGDP--------DEHLR 56 
113204634   2 APTKRKGECPGAapk------kpkEP--VQVPKLLIKGGVEVLE-VKTGVDAITEVECFLNPEMGDP--------DENLR 64 
82524376    4 PPAKRKGECPGAapk------kpkDP--VRVPKLLIRGGVEVLE-VKTGVDSITEVECFLTPEMGDA--------NEHLR 66 
134288557   1 ------MSCTPCrpqkrltrprsqVPrvQTLATEVKKGGVEVLAaVPLSEETEFKVELFVKPVIGNTtaaqdgrePTPHY 74 
148724566   1 MACTAKPACTAKpgrs----prsqPTrvQSLPKQVRKGGVDVLAaVPLSEETEFKVELFVKPVIGNAeg-----tTPHYW 71 
288804633   4 TFPKRSKGAPP-----------------SQVPKLLIKGGIEVLD-VRTGGDSITTIELFLNPRVGTP--------TEHEF 57 
297591902   4 APTKRKGSCPGAapk------kpkEP--VQVPKLVIKGGIEVLG-VKTGVDSFTEVECFLNPQMGNP--------DEHQK 66 
165974002  78 -----TYTYDLQPKGS-SPDQPIKENLPAYSVARVSLPMLNEDITCDTLQMWEAISVKTEVVGISSLINVHYWDMKRVHD 151
224460774  65 -----GYSQRVTCDVTfENDAPQKKTLPCYSTARIPLPNLNEDLTCGNILMWEAVTVKTEVLGVTSMLNLHAEAQKVHDN 139
9626486    64 -----GFSDNQRGSTSrTDEDLISAELPRYSLGVVQLPLLNEKLTDDVLLMWEAVSCKTEVVGVNTLTTCHGYKKRYSPS 138
9628646    57 -----GFSKSISISDTfESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLMNVHSNGQATHDN 131
113204634  65 -----GFSLKLSAENDfSSDSPERKMLPCYSTARIPLPNLNEDLTCGNLLMWEAVTVQTEVIGITSMLNLHAGSQKVHEH 139
82524376   67 -----GYSQRVTCDVTfENDAPQKKTLPCYSTARIPLPNLNEDLTCGNILMWEAVTVKTEVLGVTSMLNLHAEAQKVHDN 141
134288557  75 wsissAIHDKESGSSIkVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTn------ 148
148724566  72 -----SISSPLKTAEA-ANVTPDADTTVCYSLSQVAPPDIPNQVSECDMLIWELYRMETEVLVLP----------VLNAG 135
288804633  58 -----GFSGKLTVATSdDDDKPGPSELPCYSLGKVQLPMLNEDMTGEKILMWEAVSCKTEVVGVGSLCNVHSLRKRIHGD 132
297591902  67 -----GLSKSLAAEKQfTDDSPDKEQLPCYSVARIPLPNLNEDLTCGNILMWEAVTVKTEVIGVTAMLNLHSGTQKTHEN 141
165974002 152 y---GAGIPVSGVNYHMFAIGGEPLDLQGLVLDYQTEYpkTtnGGPITIEtvlgRKmTPKNQGLDPQAKAKLDKDGNYPI 228
224460774 140 ----GAGRPVQGSNFHFFSVGGEPLELQGVLHNYRTTY--P--EGTIAPK----NP-TAESQVMNTEHKAYLDKTGAYPV 206
9626486   139 ag-qGSAMPIEGINYHFFAVGGEPLEIQFICEDFKAPYhpT--ETIVPPKd---KL-SNKSQVLDPTLKGILDKDGVYPV 211
9628646   132 ----GAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKY--P--DGTIFPK----NA-TVQSQVMNTEHKAYLDKNKAYPV 198
113204634 140 ----GGGKPIQGSNFHFFAVGGEPLEMQGVLMNYRSKY--P--DGTITPK----NP-TAQSQVMNTDHKAYLDKNNAYPV 206
82524376  142 ----GAGRPVQGSNFHFFSVGGEPLELQGVLHNYRTTY--P--EGTIAPK----NP-TAESQVMNTEHKAYLDKTGAYPV 208
134288557 149 ----GVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKG--P--TTYTINP----PGdPRTLHVYNSNTPKAKVTSERYSV 216
148724566 136 ilttGGVGGIAGPQLYFWAVGGQPLDVLGLAPTEKYKGpaQ--YTVNPKT----NGtVPHVYSSSETPRARVTNEK-YSI 208
288804633 133 ttssAASQPIVGLNYHFFSVGGEPLQLQFLTENYKTKYekY--AAPVGPL-------TGLAQVLDPRLKGILDKDGLYPV 203
297591902 142 ----GAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKY--P--AQTVTPK----NA-TVDSQQMNTDHKAVLDKDNAYPV 208
165974002 229 EVWCPDPSKNENSRYYGSIQTGSQTPTVLQFSNTLTTVLLDENGVGPLCKGDGLFISCAHIVGFLFKTSGKMALHGLPRY 308
224460774 207 ECWVPDPSRNENTRYFGTYTGGENVPPVLHVTNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNSSGTQQWRGLSRY 286
9626486   212 ECWCPDPSKNENTRYFGTYTGGVSTPPVLQFTNTVTTILLDENGVGPLCKADKLYITAADICGFLTQPNDQQQFRGLPRY 291
9628646   199 ECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLSRY 278
113204634 207 ECWVPDPSRNENARYFGTFTGGENVPPVLHVTNTATTVLLDEQGVGPLCKADSLYVSAADICGLFTNSSGTQQWRGLARY 286
82524376  209 ECWVPDPSRNENTRYFGTYTGGENVPPVLHVTNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNSSGTQQWRGLSRY 288
134288557 217 ESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLG----TANSRIHTPMARF 292
148724566 209 ESWVADPSRNDNCRYFGRMVGGAATPPVVSFSNNSTIPLLDENGIGILCLQGRLYITCADLLG----VNKNRVHTGLSRF 284
288804633 204 ECWHPDPAKNENSRYFGTYTGGTETPPVMQITNSMTTILLDENGVGPLCKGDNLFLSCCDIAGFKYENANAMKFRGFPRY 283
297591902 209 ECWVPDPSKNENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNTSGTQQWKGLPRY 288
165974002 309 FNVTLRKIWVKNPYPVVNLINSLFSNLMPKVSGQPMEGKDNQVEEVRI----YEGSEQLPGNPDIVRFLDKFGQEKTVYP 384
224460774 287 FKISLRKRSVKNPYPISFLLSDLINRRTTRVQGQPMYGMNAQVEEVRV----YDGTEELPGDPDMMRYIDKYGQHQTKML 362
9626486   292 MSVTLRKRLVKNPYPIASILTSLFTNSLPPVTSQEM---DKQVEEVRI----YQGVEGLPGDPDMVRYINKFGQEETCIP 364
9628646   279 FKVQLRKRRVKNPYPISFLLTDLINRRTPRVDGQPMYGMDAQVEEVRV----FEGTEELPGDPDMMRYVDKYGQLQTKML 354
113204634 287 FKIRLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMYGMESQVEEVRV----FDGTERLPGDPDMIRYIDKQGQLQTKML 362
82524376  289 FKISLRKRSVKNPYPISFLLSDLINRRTTRVQGQPMYGMNAQVEEVRV----YDGTEELPGDPDMMRYIDKYGQHQTKML 364
134288557 293 FRLHFRQRRVKNPFTMNVLYKQVFNRPTETVDAQVGVTEVTMVEEIGPl--pPSIQTTLPTSVNLTQLPRTVTLQSQAPL 370
148724566 285 FRLHFRQRRVRNPYTINLLYKQVFNKPADDISGQLQVTEVTMTEETGPlpptVEGNVGVPTTSNLSHLPATVTLQATGPI 364
288804633 284 FSVTLRKRQVKNPYPVGSLLNSLFNKLTPEVDSQPMLGEHSQVEEVRV----YQGTEPLPGDPDLERYIDKYGQQETKVP 359
297591902 289 FKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVEEVRV----YEDTEELPGDPDMIRYIDEFGQTTTRMQ 364
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