1O7C


Conserved Protein Domain Family
Link_domain_TSG_6_like

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cd03515: Link_domain_TSG_6_like 
Click on image for an interactive view with Cn3D
This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accumulate in vascular tissues during aging and diabetes, these receptors may be implicated in the pathologies of these states. Both stabilins are present in the early endocytic pathway in hepatic sinusoidal epithelium associating with clathrin/AP-2. Stabilin-1 is expressed in macrophages. Stabilin-2 is absent from the latter. In macrophages: stabilin-1 is involved in trafficking between early/sorting endosomes and the trans-Golgi network. Stabilin-1 has also been implicated in angiogenesis and possibly leucocyte trafficking. Both stabilins bind gram-positive and gram-negative bacteria. TSG-6 and stabilins contain a single link module which supports high affinity binding to HA.
Statistics
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PSSM-Id: 239592
Aligned: 8 rows
Threshold Bit Score: 173.419
Created: 6-Mar-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:putative hyaluronan binding site [chemical binding site]
Evidence:
  • Comment:Mutation of these 5 residues each leads to large reduction in HA binding.
  • Comment:These residues are clustered on one face of the TSG-6 link module.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   ##                                              #          #       #  
1O7C_T          1 XVYHREARSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCAAGWMAKGRVGYPIVKPGPNCGFGKTGIIDYGI 80   human
AAF82398      544 GVFHLRSPLGQYKLTFDKAREACANEAATMATYNQLSYAQKAKYHLCSAGWLETGRVAYPTAFASQNCGSGVVGIVDYGP 623  human
BAC15606     2208 GVFHLQATSGPYGLNFSEAEAACEAQGAVLASFPQLSAAQQLGFHLCLMGWLANGSTAHPVVFPVADCGNGRVGIVSLGA 2287 human
CAF90813     2385 GVFHLRSDRGQYQLNYTAAQQLCAAQGASLATYSQLSYAQQGGMNMCAAGWLDQARVAYPTTYSNPLCGFGHVGIVDYGP 2464 Tetraodon nig...
AAH88707       36 GVYHRESRNGKYKLTYREAKAVCEYEGGRLATYEQLEAARQIGFHVCAAGWLHKGRVGYPIVKPTFNCGFGKKGIIDYGF 115  African clawe...
NP_001032926   36 GVYHRESRSGKYQLTYAEAKAVCEYEGGHLATYQQLEAARKIGFHVCAAGWMAKGRVGYPIVKAGANCGFGRTGIVDYGI 115  chicken
XP_001506003 2016 GVFHLQSSAGKYNLTYSEAASRCAAQGAQLASLSQLSAAQQLGFHLCLVGWLVNGSAGYATSYPSPNCGNNHVGIVNYGV 2095 platypus
CAK11487      863 GVFHLRSPEGKYKMNFTQAKQACEAEGANLATFSQLSDAQQLGMHLCVAGWMDGEKAGYPIRFPSAKCGDNHVGIVVYKD 942  zebrafish
Feature 1                      
1O7C_T         81 RLNRSERWDAYCY 93   human
AAF82398      624 RPNKSEMWDVFCY 636  human
BAC15606     2288 RKNLSERWDAYCF 2300 human
CAF90813     2465 RRNLSETWDAFCY 2477 Tetraodon nigroviridis
AAH88707      116 RLNKSERWDAYCY 128  African clawed frog
NP_001032926  116 RLNRSERWDAYCY 128  chicken
XP_001506003 2096 RANLLERWDAYCY 2108 platypus
CAK11487      943 PVNSSWLYDAYCY 955  zebrafish

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