2UWI


Conserved Protein Domain Family
TNFRSF_viral

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cd15839: TNFRSF_viral 
Click on image for an interactive view with Cn3D
Tumor necrosis factor receptor superfamily members, virus-encoded
This family contains viral TNFR homologs that include vaccinia virus (VACV) cytokine response modifier E (CrmE), an encoded TNFR that shares significant sequence similarity with mammalian type 2 TNF receptors (TNFSFR1B, p75, TNFR type 2), a cowpox virus encoded cytokine-response modifier B (crmB), which is a secreted form of TNF receptor that can contribute to the modification of TNF-mediated antiviral processes, and a myxoma virus (MYXV) T2 (M-T2) protein that binds and inhibits rabbit TNF-alpha. The CrmE structure confirms that the canonical TNFR fold is adopted, but only one of the two "ligand-binding" loops of TNFRSF1A is conserved, suggesting a mechanism for the higher affinity of poxvirus TNFRs for TNFalpha over lymphotoxin-alpha. CrmB protein specifically binds TNF-alpha and TNF-beta indicating that cowpox virus seeks to invade antiviral processes mediated by TNF. Intracellular M-T2 blocks virus-induced lymphocyte apoptosis via a highly conserved viral preligand assembly domain (vPLAD), which controls receptor signaling competency prior to ligand binding.
Statistics
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PSSM-Id: 276935
Aligned: 5 rows
Threshold Bit Score: 148.863
Created: 29-May-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 29 residues -Click on image for an interactive view with Cn3D
Feature 1:CRD1 [structural motif]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     #######      #################    #####                                         
2UWI_A      2 CEQGVSYynsqelKCCKLCKPGTYSDHRCDk--ySDTICGHCPSdTFTSIYNRsPWCHSCRGPCGTNRVEVTPCTPTtNR 79  Vaccinia virus Lister
AFU76934   28 CRGNDYEkd---gLCCTSCPPGSYASRLCGp--gSDTVCSPCKNeTFTASTNHaPACVSCRGRCTGHLSESQSCDKTrDR 102 Myxoma virus
O73559     32 CKDNEYNrh---nLCCLSCPPGTYASRLCDsktnTNTQCTPCGSgTFTSRNNHlPACLSCNGRCDSNQVETRSCNTThNR 108 Cowpox virus (stra...
ADZ29325   31 CNGTDYNsns-nnLCCKQCDPGMYMTHSCNt--tSNTKCAKCPDgTFTSIPNHiPTCLSCRGKCSSNQVETKSCSNTqDR 107 Cowpox virus
AGY99035   31 CNGTDYNsns-nnLCCKQCDPGMYMTHSCNt--tSNTKCDKCPDdTFTSIPNHiPTCLSCRGKCSSNQVETKSCSNTqAE 107 Cowpox virus
Feature 1                                                        
2UWI_A     80 ICHCDSNSYCllkasdgnCVTCAPKTKCgrgyg--kkgeDEMGNTICKKCR 128 Vaccinia virus Lister
AFU76934  103 VCDCSAGNYCllkg-qegCRICAPKTKCpagyg--vsghTRTGDVLCTKCP 150 Myxoma virus
O73559    109 ICECAPGYYCllkg-ssgCKACVSQTKCgigyg--vsghTSTGDVVCSPCG 156 Cowpox virus (strain GRI-90)
ADZ29325  108 VCVCASGYYCefeg-sngCRLCVPQTKCdsgyg--vygySSKGDVICKKCP 155 Cowpox virus
AGY99035  108 YVSVHPDTTAnlk---dqTVAGYAYHKQsvilvtvymatHLKEMQYVKKCP 155 Cowpox virus

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