1LFO,3STK,2JU3


Conserved Protein Domain Family
FABP1

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cd19444: FABP1 
fatty acid-binding protein 1
Fatty acid-binding protein 1, FABP1 (also known as fatty acid-binding protein 1, liver FABP, L-FABP) occurs at high cytosolic concentration in liver, intestine, and, in the case of humans, also in kidney. FABP1 binds to two molecules of long-chain fatty acids; the two binding sites appear to be inter-dependent. FABP1 binds to fatty acyl-CoAs, peroxisome proliferators, prostaglandins, bile acids, bilirubin, heme, hydroxyl and hydroperoxyl metabolites of fatty acids, lysophosphatidic acids, selenium, and other hydrophobic ligands. FABP1 is down-regulated in about ten percent of hepatocellular carcinoma (HCC) as well as in colorectal cancer at the adenoma stage, but can also be over-expressed in various cancers. This subgroup belongs to the intracellular fatty acid-binding protein (FABP) family, members of which are small proteins that bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381219
Aligned: 10 rows
Threshold Bit Score: 182.303
Created: 22-Jun-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 36 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:ligand is bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on FABP1 and on other cytosolic fatty acid-binding protein family members with structure
  • Citation:PMID 7683727
  • Structure:1LFO; Rattus norvegicus liver fatty acid-binding protein with two bound oleates, contacts 4A
    View structure with Cn3D
  • Citation:PMID 9054409

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #           #  ##  #     ## ##  # # # #      # # # #### # # #       ####       
1LFO_A         3 NFSGKYQVQSQENFEPFMKAMGlpEDLIQKGKDIKGVSEIVHEGKKVKLTITYGSKVIHNEFTLGEEXELETMTGEKVKA 82  Norway rat
P07148         2 SFSGKYQLQSQENFEAFMKAIGlpEELIQKGKDIKGVSEIVQNGKHFKFTITAGSKVIQNEFTVGEECELETMTGEKVKT 81  human
3STK_A         5 SFSGKYQLQSQENFEAFMKAIGlpEELIQKGKDIKGVSEIVQNGKHFKFTITAGSKVIQNEFTVGEECELETMTGEKVKT 84  human
Q4VBT1         2 SFTGKYQLESQEGFVEFMKAVGlpDDMIEKGKDIKSVSEIEENGNQFKVTVTTGSKVLTNSFTIGQEADIETLTGERVKT 81  zebrafish
AFK10903      29 AFNGKYELENQDNFGPFMKALGlsDEMIEKGNDLKSVSEIVQNGNHFKITVTTGTKVLTNEFIVGQETDVQTPTGAKMKA 108 ghost shark
AAS68018       2 SFTGKYELQSHENFEPFMKALGlpDDQIQKGKDIKSISEIVQNGNKFKITVTTGSKVMTNEFTIGEECEMELLTGEKAKC 81  chicken
2JU3_A         2 NFSGKYQVQSQENFEPFMKAMGlpEDLIQKGKDIKGVSEIVHEGKKVKLTITYGSKVIHNEFTLGEECELETMTGEKVKA 81  Norway rat
P81399         1 SFAGKYELQSQENFEAFMKAIGlpDELIQKGKDIKSVSEIQQNGKSFKVTVTTGSKVLENEFTLGEEAELETLTGEKVKS 80  axolotl
NP_001038177   2 AFTGKYQLESHENFEAFMKAVGvpDDEVEKGKDIKSISEIHQDGKDFKVTVTAGTKVILYSFTVGEECELETFTGDRAKT 81  zebrafish
XP_002663094   2 PFSGKFELEKYEGWEEFMTAIGh-QELLKKANDGKTQFEIQENGNDYCLTTRSGGKVLNNSFTIGQDTEIQMLSGDKVKT 80  zebrafish
Feature 1                 # #      # #       # # #         # #   
1LFO_A        83 VVKMEGdNKMVTTFKGIKSVTEFNG-DTITNTMTLGd-IVYKRVSKRI 128 Norway rat
P07148        82 VVQLEGdNKLVTTFKNIKSVTELNG-DIITNTMTLGd-IVFKRISKRI 127 human
3STK_A        85 VVQLEGdNKLVTTFKNIKSVTELNG-DIITNTMTLGd-IVFKRISKRI 130 human
Q4VBT1        82 IVNREG-NKLKVVLNRITSITELVDaNTLVNTLTLGg-LVYKRISKRV 127 zebrafish
AFK10903     109 IINLEGtNKLVLKAENVTSITELTG-DRLVNTMTIGn-IVYKRQSKKI 154 ghost shark
AAS68018      82 IVNMEGnNKLVANLKGLKSVTELNG-DTITHTMTKGd-LTYKRISKRI 127 chicken
2JU3_A        82 VVKMEGdNKMVTTFKGIKSVTEFNG-DTITNTMTLGd-IVYKRVSKRI 127 Norway rat
P81399        81 IVKQEGdNKLVVNLKGITSVTELSG-DTLINTLQKGd-DTYKRISKRI 126 axolotl
NP_001038177  82 VVQMDG-NKLTAFVKGIESVTELDG-DTISNTLSFNg-IVYKRISRRI 126 zebrafish
XP_002663094  81 VVHKDG-QKLKAALGNITLTWELLDeNTLLITLSTAdnVAYKRFSKRV 127 zebrafish

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