SPNS1[gene] - ClinVar - NCBI

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	Variation	Gene (Protein Change)	Type (Consequence)	Condition	Classification, Review status
Select item 144327	GRCh38/hg38 16p13.3-11.2(chr16:4644892-29170820)x3	ABAT, ABCC1 +851 more	Copy number gain	See cases	GPathogenic
Select item 151527	GRCh38/hg38 16p12.2-11.2(chr16:21350622-29202837)x3	APOBR, AQP8 +287 more	Copy number gain	See cases	GLikely pathogenic
Select item 58086	GRCh38/hg38 16p12.2-11.2(chr16:21463739-29249579)x3	LOC130058727, LOC130058728 +287 more	Copy number gain	See cases	GPathogenic
Select item 58099	GRCh38/hg38 16p12.2-11.2(chr16:21602183-29314373)x3	OTOA, PALB2 +280 more	Copy number gain	See cases	GPathogenic
Select item 146289	GRCh38/hg38 16p12.2-11.2(chr16:22634385-29227323)x3	APOBR, AQP8 +233 more	Copy number gain	See cases	GLikely pathogenic
Select item 58626	GRCh38/hg38 16p12.2-11.2(chr16:23047969-30632245)x3	DCTPP1, DOC2A +409 more	Copy number gain	See cases	GPathogenic
Select item 152605	GRCh38/hg38 16p12.2-11.2(chr16:23752047-31943755)x3	LOC130058732, LOC130058733 +504 more	Copy number gain	See cases	GPathogenic
Select item 151637	GRCh38/hg38 16p12.1-11.2(chr16:27311746-31193406)x3	ZNF747, ZNF747-DT +378 more	Copy number gain	See cases	GPathogenic
Select item 59292	GRCh38/hg38 16p12.1-11.2(chr16:28293803-29531653)x3	APOBR, ATP2A1 +78 more	Copy number gain	See cases	GUncertain significance
Select item 153260	GRCh38/hg38 16p12.1-11.2(chr16:28320366-29415078)x3	APOBR, ATP2A1 +72 more	Copy number gain	See cases	GUncertain significance
Select item 148782	GRCh38/hg38 16p12.1-11.2(chr16:28327346-29342070)x1	ATP2A1, APOBR +70 more	Copy number loss	See cases	GPathogenic
Select item 545197	NC_000016.10:g.(?_28351819)_(29325073_?)del	APOBR, ATP2A1 +68 more	Deletion	Schizophrenia	GPathogenic
Select item 60446	GRCh38/hg38 16p12.1-11.2(chr16:28366111-30183432)x3	LOC125146439, LOC125146440 +179 more	Copy number gain	See cases	GPathogenic
Select item 150351	GRCh38/hg38 16p12.1-11.2(chr16:28392026-29170879)x3	APOBR, ATP2A1 +61 more	Copy number gain	See cases	GUncertain significance
Select item 152023	GRCh38/hg38 16p12.1-11.2(chr16:28392832-29170875)x1	APOBR, ATP2A1 +61 more	Copy number loss	See cases	GPathogenic
Select item 151177	GRCh38/hg38 16p12.1-11.2(chr16:28392832-30320693)x1	ALDOA, APOBR +187 more	Copy number loss	See cases	GPathogenic
Select item 150642	GRCh38/hg38 16p12.1-11.2(chr16:28392832-29320029)x1	APOBR, ATP2A1 +66 more	Copy number loss	See cases	GPathogenic
Select item 148886	GRCh38/hg38 16p12.1-11.2(chr16:28392832-29342070)x1	APOBR, ATP2A1 +67 more	Copy number loss	See cases	GPathogenic
Select item 148506	GRCh38/hg38 16p12.1-11.2(chr16:28392832-30186020)x1	ALDOA, APOBR +180 more	Copy number loss	See cases	GPathogenic
Select item 58735	GRCh38/hg38 16p12.1-11.2(chr16:28456967-30295107)x1	ALDOA, APOBR +186 more	Copy number loss	See cases	GPathogenic
Select item 148497	GRCh38/hg38 16p12.1-11.2(chr16:28487211-29202837)x3	APOBR, ATP2A1 +61 more	Copy number gain	See cases	GUncertain significance
Select item 154502	GRCh38/hg38 16p12.1-11.2(chr16:28492482-29170875)x3	APOBR, ATP2A1 +57 more	Copy number gain	See cases	GUncertain significance
Select item 146479	GRCh38/hg38 16p12.1-11.2(chr16:28492482-30179247)x3	ALDOA, APOBR +171 more	Copy number gain	See cases	GPathogenic
Select item 146471	GRCh38/hg38 16p12.1-11.2(chr16:28492482-29170875)x1	LOC130058739, LOC130058740 +57 more	Copy number loss	See cases	GLikely pathogenic
Select item 146463	GRCh38/hg38 16p12.1-11.2(chr16:28492482-29320029)x3	APOBR, ATP2A1 +62 more	Copy number gain	See cases	GUncertain significance
Select item 34150	GRCh38/hg38 16p12.1-11.2(chr16:28492482-30179247)x1	ALDOA, APOBR +171 more	Copy number loss	See cases	GPathogenic
Select item 60372	GRCh38/hg38 16p11.2(chr16:28531783-30183432)x1	LOC130058756, LOC130058757 +170 more	Copy number loss	See cases	GPathogenic
Select item 59641	GRCh38/hg38 16p11.2(chr16:28531783-29025786)x1	ATP2A1, ATP2A1-AS1 +48 more	Copy number loss	See cases	GPathogenic
Select item 145658	GRCh38/hg38 16p11.2(chr16:28584316-29019738)x3	ATP2A1, ATP2A1-AS1 +44 more	Copy number gain	See cases	Gconflicting data from submitters
Select item 160911	GRCh38/hg38 16p11.2(chr16:28589904-29030797)x3	ATP2A1, ATP2A1-AS1 +45 more	Copy number gain	See cases	GUncertain significance
Select item 59293	GRCh38/hg38 16p11.2(chr16:28589904-29030797)x3	ATP2A1, ATP2A1-AS1 +45 more	Copy number gain	See cases	GUncertain significance
Select item 59294	GRCh38/hg38 16p11.2(chr16:28592408-29025786)x3	ATP2A1, ATP2A1-AS1 +43 more	Copy number gain	See cases	GUncertain significance
Select item 59295	GRCh38/hg38 16p11.2(chr16:28599237-29025786)x3	ATP2A1, ATP2A1-AS1 +41 more	Copy number gain	See cases	GUncertain significance
Select item 1679691	Single allele	LOC130058744, LOC130058745 +44 more	Deletion	Distal 16p11.2 microdeletion syndrome	GPathogenic
Select item 155233	GRCh38/hg38 16p11.2(chr16:28677764-29039870)x1	ATP2A1, ATP2A1-AS1 +37 more	Copy number loss	See cases	GPathogenic
Select item 153218	GRCh38/hg38 16p11.2(chr16:28696852-29039870)x1	ATP2A1, ATP2A1-AS1 +37 more	Copy number loss	See cases	GPathogenic
Select item 59643	GRCh38/hg38 16p11.2(chr16:28710478-29025786)x1	ATP2A1, ATP2A1-AS1 +36 more	Copy number loss	See cases	GPathogenic
Select item 59642	GRCh38/hg38 16p11.2(chr16:28710478-29025786)x3	ATP2A1, ATP2A1-AS1 +36 more	Copy number gain	See cases	GUncertain significance
Select item 148525	GRCh38/hg38 16p11.2(chr16:28722418-29033455)x1	ATP2A1, ATP2A1-AS1 +37 more	Copy number loss	See cases	GPathogenic
Select item 155463	GRCh38/hg38 16p11.2(chr16:28807707-29039870)x1	ATP2A1, ATP2A1-AS1 +34 more	Copy number loss	See cases	GPathogenic
Select item 151536	GRCh38/hg38 16p11.2(chr16:28809422-29033455)x1	ATP2A1, ATP2A1-AS1 +34 more	Copy number loss	See cases	GPathogenic
Select item 1184309	NC_000016.10:g.28812342_29035950dup	LOC130058735, ATP2A1 +34 more	Duplication	not provided	GUncertain significance
Select item 149412	GRCh38/hg38 16p11.2(chr16:28813473-29033455)x1	ATP2A1, ATP2A1-AS1 +34 more	Copy number loss	See cases	GPathogenic
Select item 149239	GRCh38/hg38 16p11.2(chr16:28813473-29032639)x1	ATP2A1, ATP2A1-AS1 +34 more	Copy number loss	See cases	GPathogenic
Select item 148483	GRCh38/hg38 16p11.2(chr16:28813473-29122414)x1	ATP2A1, ATP2A1-AS1 +36 more	Copy number loss	See cases	GLikely pathogenic
Select item 145955	GRCh38/hg38 16p11.2(chr16:28813473-29032580)x3	ATP2A1, ATP2A1-AS1 +34 more	Copy number gain	See cases	Gconflicting data from submitters
Select item 59296	GRCh38/hg38 16p11.2(chr16:28813473-28981076)x3	ATP2A1, ATP2A1-AS1 +28 more	Copy number gain	See cases	GUncertain significance
Select item 1326293	GRCh38/hg38 16p11.2(chr16:28814284-29129367)x3	NFATC2IP-AS1, RABEP2 +36 more	Copy number gain	not provided	Gnot provided
Select item 3024379	GRCh38/hg38 16p11.2(chr16:28825316-29028291)	ATP2A1, ATP2A1-AS1 +32 more	Copy number loss	Autism spectrum disorder	GPathogenic
Select item 59644	GRCh38/hg38 16p11.2(chr16:28826129-29030797)x1	ATP2A1, ATP2A1-AS1 +33 more	Copy number loss	See cases	GPathogenic
Select item 149864	GRCh38/hg38 16p11.2(chr16:28832433-29019750)x1	ATP2A1, ATP2A1-AS1 +32 more	Copy number loss	See cases	GPathogenic
Select item 149863	GRCh38/hg38 16p11.2(chr16:28832433-29019750)x3	ATP2A1, ATP2A1-AS1 +32 more	Copy number gain	See cases	GUncertain significance
Select item 59684	GRCh38/hg38 16p11.2(chr16:28843308-29025786)x1	ATP2A1, ATP2A1-AS1 +31 more	Copy number loss	See cases	GPathogenic
Select item 59683	GRCh38/hg38 16p11.2(chr16:28843308-29025786)x3	ATP2A1, ATP2A1-AS1 +31 more	Copy number gain	See cases	GUncertain significance
Select item 148434	GRCh38/hg38 16p11.2(chr16:28850210-29032639)x1	ATP2A1, ATP2A1-AS1 +29 more	Copy number loss	See cases	GPathogenic
Select item 32783	GRCh38/hg38 16p11.2(chr16:28850210-29019738)x1	ATP2A1, ATP2A1-AS1 +28 more	Copy number loss	See cases	GPathogenic
Select item 150196	GRCh38/hg38 16p11.2(chr16:28850245-29019750)x3	ATP2A1, ATP2A1-AS1 +28 more	Copy number gain	See cases	GUncertain significance
Select item 3169231	NM_032038.3(SPNS1):c.200A>G (p.Tyr67Cys)	SPNS1 (Y67C)	Single nucleotide variant (missense variant +1 more)	not specified	GUncertain significance
Select item 2244493	NM_032038.3(SPNS1):c.375G>T (p.Lys125Asn)	SPNS1 (K125N +2 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2408444	NM_032038.3(SPNS1):c.439G>A (p.Gly147Arg)	SPNS1 (G125R +2 more)	Single nucleotide variant (missense variant)	not specified	GLikely benign
Select item 2469178	NM_032038.3(SPNS1):c.636G>C (p.Met212Ile)	SPNS1 (M190I +2 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2210732	NM_032038.3(SPNS1):c.742C>T (p.Arg248Cys)	SPNS1 (R175C +2 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2289281	NM_032038.3(SPNS1):c.818T>A (p.Phe273Tyr)	SPNS1 (F200Y +1 more)	Single nucleotide variant (missense variant +1 more)	not specified	GUncertain significance
Select item 2272173	NM_032038.3(SPNS1):c.875T>C (p.Leu292Pro)	SPNS1 (L292P +1 more)	Single nucleotide variant (missense variant +1 more)	not specified	GUncertain significance
Select item 2646357	NM_032038.3(SPNS1):c.981C>A (p.Leu327=)	SPNS1	Single nucleotide variant (synonymous variant)	not provided	GLikely benign
Select item 2646358	NM_032038.3(SPNS1):c.996C>T (p.Thr332=)	SPNS1	Single nucleotide variant (synonymous variant)	not provided	GLikely benign
Select item 2359108	NM_032038.3(SPNS1):c.1012G>A (p.Gly338Ser)	SPNS1 (G264S +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2288425	NM_032038.3(SPNS1):c.1060G>A (p.Ala354Thr)	SPNS1 (A280T +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3169229	NM_032038.3(SPNS1):c.1207G>T (p.Ala403Ser)	SPNS1 (A329S +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2220461	NM_032038.3(SPNS1):c.1210G>A (p.Asp404Asn)	SPNS1 (D404N +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2303499	NM_032038.3(SPNS1):c.1313T>C (p.Ile438Thr)	SPNS1 (I386T +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2324359	NM_032038.3(SPNS1):c.1362G>T (p.Leu454Phe)	SPNS1 (L454F +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 775042	NM_032038.3(SPNS1):c.1425C>T (p.Gly475=)	SPNS1	Single nucleotide variant (synonymous variant)	not provided	GBenign
Select item 2222814	NM_032038.3(SPNS1):c.1472G>A (p.Arg491Gln)	SPNS1 (R417Q +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2480741	NM_032038.3(SPNS1):c.1504G>A (p.Glu502Lys)	SPNS1 (E502K +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2367993	NM_032038.3(SPNS1):c.1549C>T (p.Arg517Cys)	SPNS1 (R517C +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2570936	NM_032038.3(SPNS1):c.1550G>A (p.Arg517His)	SPNS1 (R443H +3 more)	Single nucleotide variant (missense variant)	not provided	GLikely benign
Select item 3169230	NM_032038.3(SPNS1):c.1561G>A (p.Val521Met)	SPNS1 (V447M +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2205666	NM_032038.3(SPNS1):c.1567G>A (p.Val523Met)	SPNS1 (V471M +3 more)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3063469	GRCh37/hg19 16p11.2(chr16:28485883-29347116)x1	APOBR, ATP2A1 +15 more	Copy number loss	not specified	GPathogenic
Select item 3063422	GRCh37/hg19 16p11.2(chr16:28371467-29379768)x1	APOBR, ATP2A1 +17 more	Copy number loss	not specified	GPathogenic
Select item 3063415	GRCh37/hg19 16p11.2(chr16:28486928-29438326)x1	APOBR, ATP2A1 +15 more	Copy number loss	not specified	GPathogenic
Select item 2685567	GRCh37/hg19 16p11.2(chr16:28824491-29070000)x1	ATP2A1, ATXN2L +7 more	Copy number loss	not provided	GPathogenic
Select item 2685565	GRCh37/hg19 16p11.2(chr16:28819029-29088624)x1	ATP2A1, ATXN2L +7 more	Copy number loss	not provided	GPathogenic
Select item 2685564	GRCh37/hg19 16p11.2(chr16:28747521-29084772)x1	ATP2A1, ATXN2L +7 more	Copy number loss	not provided	GPathogenic
Select item 2684802	GRCh37/hg19 16p11.2(chr16:28819029-28998525)x3	ATP2A1, ATXN2L +7 more	Copy number gain	not provided	GUncertain significance
Select item 2684801	GRCh37/hg19 16p11.2(chr16:28802398-29051191)x3	ATP2A1, ATXN2L +7 more	Copy number gain	not provided	GUncertain significance
Select item 2684800	GRCh37/hg19 16p11.2(chr16:28747521-29043450)x3	ATP2A1, ATXN2L +7 more	Copy number gain	not provided	GUncertain significance
Select item 2684799	GRCh37/hg19 16p11.2(chr16:28441539-29351827)x3	APOBR, ATP2A1 +15 more	Copy number gain	not provided	GUncertain significance
Select item 2580325	GRCh37/hg19 16p11.2(chr16:28834531-29001678)x1	ATP2A1, ATXN2L +7 more	Copy number loss	Distal 16p11.2 microdeletion syndrome	GPathogenic
Select item 2573121	GRCh37/hg19 16p12.2-11.2(chr16:21475039-29043958)x1	NPIPB5, PALB2 +64 more	Copy number loss	Chromosome 16p12.2-p11.2 deletion syndrome	GPathogenic
Select item 2423570	NC_000016.9:g.(?_27441393)_(29001333_?)del	APOBR, ATP2A1 +23 more	Deletion	Neuronal ceroid lipofuscinosis	GPathogenic
Select item 1809394	GRCh37/hg19 16p11.2(chr16:28371468-29342589)x3	APOBR, ATP2A1 +17 more	Copy number gain	not provided	GUncertain significance
Select item 1808864	GRCh37/hg19 16p11.2(chr16:28384464-29432245)x3	APOBR, ATP2A1 +16 more	Copy number gain	not provided	GUncertain significance
Select item 1808696	GRCh37/hg19 16p12.2-11.2(chr16:21576803-30177240)x3	ALDOA, APOBR +93 more	Copy number gain	not provided	GPathogenic
Select item 1808612	GRCh37/hg19 16p11.2(chr16:28763835-29051191)x1	ATP2A1, ATXN2L +7 more	Copy number loss	not provided	GPathogenic
Select item 1808112	GRCh37/hg19 16p11.2(chr16:28490480-29379768)x1	APOBR, ATP2A1 +15 more	Copy number loss	not provided	GPathogenic
Select item 1807834	GRCh37/hg19 16p11.2(chr16:28486929-29351826)x1	APOBR, ATP2A1 +15 more	Copy number loss	not provided	GPathogenic
Select item 1807828	GRCh37/hg19 16p11.2(chr16:28466731-30321320)x1	ALDOA, APOBR +48 more	Copy number loss	not provided	GPathogenic
Select item 1807793	GRCh37/hg19 16p13.3-11.2(chr16:4380767-30445350)x3	ABAT, ABCC1 +226 more	Copy number gain	not provided	GPathogenic

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