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NM_000668.5(ADH1B):c.143A= (p.His48=) AND Aerodigestive tract cancer, squamous cell, alcohol-related, protection against

Germline classification:
protective (1 submission)
Last evaluated:
Jul 1, 2002
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000019814.4

Allele description

NM_000668.5(ADH1B):c.143A= (p.His48=)

Gene:
ADH1B:alcohol dehydrogenase 1B (class I), beta polypeptide [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q23
Genomic location:
Preferred name:
NM_000668.5(ADH1B):c.143A= (p.His48=)
Other names:
ADH1B, ARG48HIS, (rs1229984); R48H; ADH1B*2
HGVS:
  • NC_000004.12:g.99318162=
  • NG_011435.1:g.8254=
  • NG_011435.1:g.8254A=
  • NM_000668.6:c.143=MANE SELECT
  • NM_001286650.2:c.23=
  • NP_000659.2:p.His48=
  • NP_001273579.1:p.His8=
  • NC_000004.11:g.100239319=
  • NG_011435.1:g.8254A=
Protein change:
ARG48HIS
Links:
OMIM: 103720.0001; dbSNP: rs1229984
NCBI 1000 Genomes Browser:
rs1229984
Molecular consequence:
  • NM_000668.6:c.143= - no sequence alteration - [Sequence Ontology: SO:0002073]
  • NM_001286650.2:c.23= - no sequence alteration - [Sequence Ontology: SO:0002073]

Condition(s)

Name:
Aerodigestive tract cancer, squamous cell, alcohol-related, protection against
Identifiers:
MedGen: C3887915

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000040112OMIM
no assertion criteria provided
protective
(Jul 1, 2002)
germlineliterature only

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Regulation of the mammalian alcohol dehydrogenase genes.

Edenberg HJ.

Prog Nucleic Acid Res Mol Biol. 2000;64:295-341. Review.

PubMed [citation]
PMID:
10697413

A global perspective on genetic variation at the ADH genes reveals unusual patterns of linkage disequilibrium and diversity.

Osier MV, Pakstis AJ, Soodyall H, Comas D, Goldman D, Odunsi A, Okonofua F, Parnas J, Schulz LO, Bertranpetit J, Bonne-Tamir B, Lu RB, Kidd JR, Kidd KK.

Am J Hum Genet. 2002 Jul;71(1):84-99. Epub 2002 Jun 5.

PubMed [citation]
PMID:
12050823
PMCID:
PMC384995
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000040112.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (5)

Description

The ARG47HIS variant has been designated as R48H based on numbering which includes the translation initiation codon (Edenberg, 2007). The HIS variant is associated with more rapid ethanol oxidation to acetaldehyde compared to the ARG variant.

The arg48 and his48 variants of ADH1B are often referred to as ADH1B*1 and ADH1B*2, respectively. However, Osier et al. (2002) noted that ADH1B*1 and ADH1B*2 are alleles that also include the ADH1B R370C variant (103720.0002).

Jornvall et al. (1984) determined that the 'atypical' variant of ADH1B, commonly found in persons of Asian origin, results from an arg48-to-his (R48H) substitution in exon 3 of the gene, in a position that binds the pyrophosphate group of coenzyme NAD(H); this change explains the functional differences between the 2 isozymes, including both a lower pH optimum and higher turnover of the atypical variant.

Matsuo et al. (1989) also showed that the 'typical' and 'atypical' forms of ADH1B differ by only a single amino acid: R48H, resulting from a G-to-A transition. The ADH1B*1 typical allele has an arg48 (CGC), whereas the ADH1B*2 atypical allele has his48 (CAC). The kinetic properties of the 2 variants in the coenzyme binding site were found to differ considerably: the V(max) of ethanol oxidation to acetaldehyde was increased by 100-fold in homozygotes for the his48 allele compared to homozygotes for the arg48 allele.

Using site-directed mutagenesis, Hurley et al. (1990) studied the effects of substitution of lysine, histidine, glutamine, and glycine for arginine-48 in beta-1/beta-1. They expressed the enzymes in E. coli and compared their kinetics.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 18, 2022