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NM_207034.3(EDN3):c.49G>A (p.Ala17Thr) AND not provided

Germline classification:
Benign (4 submissions)
Last evaluated:
Feb 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000950863.12

Allele description

NM_207034.3(EDN3):c.49G>A (p.Ala17Thr)

Gene:
EDN3:endothelin 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.32
Genomic location:
Preferred name:
NM_207034.3(EDN3):c.49G>A (p.Ala17Thr)
HGVS:
  • NC_000020.11:g.59300861G>A
  • NG_008050.1:g.5418G>A
  • NM_001302455.2:c.49G>A
  • NM_001302456.2:c.49G>A
  • NM_207032.3:c.49G>A
  • NM_207033.3:c.49G>A
  • NM_207034.3:c.49G>AMANE SELECT
  • NP_001289384.1:p.Ala17Thr
  • NP_001289385.1:p.Ala17Thr
  • NP_996915.1:p.Ala17Thr
  • NP_996916.1:p.Ala17Thr
  • NP_996917.1:p.Ala17Thr
  • LRG_1381t1:c.49G>A
  • LRG_1381:g.5418G>A
  • LRG_1381p1:p.Ala17Thr
  • NC_000020.10:g.57875916G>A
  • NM_207034.1:c.49G>A
  • NM_207034.2:c.49G>A
  • P14138:p.Ala17Thr
Protein change:
A17T; ALA17THR
Links:
UniProtKB: P14138#VAR_009078; OMIM: 131242.0004; dbSNP: rs11570255
NCBI 1000 Genomes Browser:
rs11570255
Molecular consequence:
  • NM_001302455.2:c.49G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302456.2:c.49G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_207032.3:c.49G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_207033.3:c.49G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_207034.3:c.49G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000730440GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Benign
(Sep 28, 2018)
germlineclinical testing

Citation Link,

SCV001097203Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Benign
(Jan 8, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001143832Athena Diagnostics Inc
criteria provided, single submitter

(Athena Diagnostics Criteria)
Benign
(Nov 9, 2018)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

SCV004698279CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Feb 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Highly recurrent RET mutations and novel mutations in genes of the receptor tyrosine kinase and endothelin receptor B pathways in Chinese patients with sporadic Hirschsprung disease.

Garcia-Barceló M, Sham MH, Lee WS, Lui VC, Chen BL, Wong KK, Wong JS, Tam PK.

Clin Chem. 2004 Jan;50(1):93-100. Epub 2003 Nov 18.

PubMed [citation]
PMID:
14633923
See all PubMed Citations (4)

Details of each submission

From GeneDx, SCV000730440.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 27535533, 9359047, 9587491, 20127975, 14633923, 30936914)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Invitae, SCV001097203.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Athena Diagnostics Inc, SCV001143832.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004698279.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

EDN3: BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Apr 15, 2024