U.S. flag

An official website of the United States government

NM_000141.5(FGFR2):c.943G>T (p.Ala315Ser) AND not provided

Germline classification:
Pathogenic (3 submissions)
Last evaluated:
Sep 15, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001280733.7

Allele description [Variation Report for NM_000141.5(FGFR2):c.943G>T (p.Ala315Ser)]

NM_000141.5(FGFR2):c.943G>T (p.Ala315Ser)

Gene:
FGFR2:fibroblast growth factor receptor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q26.13
Genomic location:
Preferred name:
NM_000141.5(FGFR2):c.943G>T (p.Ala315Ser)
HGVS:
  • NC_000010.11:g.121517460C>A
  • NG_012449.2:g.85999G>T
  • NM_000141.5:c.943G>TMANE SELECT
  • NM_001144913.1:c.1087+1222G>T
  • NM_001144914.1:c.749-2141G>T
  • NM_001144915.2:c.676G>T
  • NM_001144916.2:c.598G>T
  • NM_001144917.2:c.939+2519G>T
  • NM_001144918.2:c.598G>T
  • NM_001144919.2:c.820+1222G>T
  • NM_001320654.2:c.259G>T
  • NM_001320658.2:c.943G>T
  • NM_022970.4:c.1087+1222G>T
  • NM_023029.2:c.676G>T
  • NP_000132.3:p.Ala315Ser
  • NP_000132.3:p.Ala315Ser
  • NP_001138387.1:p.Ala226Ser
  • NP_001138388.1:p.Ala200Ser
  • NP_001138390.1:p.Ala200Ser
  • NP_001307583.1:p.Ala87Ser
  • NP_001307587.1:p.Ala315Ser
  • NP_075418.1:p.Ala226Ser
  • LRG_994t1:c.943G>T
  • LRG_994:g.85999G>T
  • LRG_994p1:p.Ala315Ser
  • NC_000010.10:g.123276974C>A
  • NM_000141.4:c.943G>T
  • NR_073009.2:n.1379G>T
  • P21802:p.Ala315Ser
Protein change:
A200S; ALA315SER
Links:
UniProtKB: P21802#VAR_017267; OMIM: 176943.0028; dbSNP: rs121918504
NCBI 1000 Genomes Browser:
rs121918504
Molecular consequence:
  • NM_001144913.1:c.1087+1222G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001144914.1:c.749-2141G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001144917.2:c.939+2519G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001144919.2:c.820+1222G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_022970.4:c.1087+1222G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000141.5:c.943G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001144915.2:c.676G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001144916.2:c.598G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001144918.2:c.598G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001320654.2:c.259G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001320658.2:c.943G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_023029.2:c.676G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_073009.2:n.1379G>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001468050Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Sep 15, 2020)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001955857Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Pathogenicgermlineclinical testing

SCV001964170Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Pathogenicgermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center, SCV001468050.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PS2, PM2, PM1, PM5, PS4-Supportive

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001955857.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001964170.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 15, 2024